Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3834 ATGTGGAACCTAAATGACTCACCCGATCAGAGAAAAAACTACGAATCAGAAGGATGTTCAATCGACGGCGATGAAGTTGATGAAAAAGGAAAAGGAGTTGGATCTGTTTCGAATTCAAGTTCATCTGTAGTTGTTATAGAAGATGGATCGGAAGAAGAAGGTAACGATAACAGCAATAACAGTAACGGTAACGGAGCGTTGTTGAAGAAAAGAAGTAGTAAGATTTTCGGATTCTCAATGGATGACAGTGATGACTGTCCACCGGTGACTAGACAGTTTTTTCCGGTGGAGGATTCTGAGGTGACAGCGGTGGTGGATTCTTCTCCCGGTGGCGGCAGCGGTGGAGTTAGTTCTTCTTTTCCACGTGCTCACTGGGTAGGTGTGAAGTTTTGCCAATCGGAATCAGTTAACGGCGGAAAATCGATAGAAGCGTCGTCGCAACCAATTAAGAAGAGTCGTCGAGGACCGAGGTCGAGAAGTTCACAGTATAGAGGCGTTACTTTTTACCGACGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCTTATGATAGAGCTGCAATTAAGTTCAGAGGAGTGGAAGCGGATATAAACTTCAACATAGAAGATTATGAAGAGGATTTGAAGCAGATGAGTAATTTAACAAAGGAAGAGTTTGTGCATGTGCTTCGGCGACAAAGCACTGGATTTCCGAGAGGAAGTTCGAAATATAGAGGTGTAACTTTGCATAAATGTGGAAGATGGGAAGCTCGAATGGGTCAATTCTTAGGGAAAAAGTATGTTTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTTACCAATTTTGATCCTAGCATCTATGATAATGAGCTTAACAATACTGAATCCTCAGGTAATGCCGCGGAGCATAATCTGGATTTAAGTTTGGGTAATTCAAGTTCTAAAGGTAACAATAGTCAAGCATTTGGGAATTACAACACAAACGTTGTTACTGATCAGCATATGGCACCTGAATCAAATTGGCGGAACGGTGGAATCAGGCCTAAACCGGTAAATATACTTCCAAAACCATGTGGTATAAGTAACATGGAAGGCTATGTAAGGGACGGATATGGCGAGAGTGAAGCCTTGCGGTTGTTAAGCCAAACTCATCTTCAATCTCCAGTCACTAATGACATGCATAGATATGGTCCCTACAGGTCACCTGTTGAACAACAACACCCTCAAATGCTTCACAGTTTTCCACATCTTCACCCCTCAAATTTTCAAGTATCGAGCAGCAGCAGCAACGGAGGCCGAATTGGAAGCGATTTATCATTATCAATGTCGGATCAACAAAAATGGCAAACTGGGCCTCCGCATTTGTTCGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAGATAACAAGACCCTCTTCTTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACACTCATGAGACCCTCTTGA 1569 0.434 MWNLNDSPDQRKNYESEGCSIDGDEVDEKGKGVGSVSNSSSSVVVIEDGSEEEGNDNSNNSNGNGALLKKRSSKIFGFSMDDSDDCPPVTRQFFPVEDSEVTAVVDSSPGGGSGGVSSSFPRAHWVGVKFCQSESVNGGKSIEASSQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNNTESSGNAAEHNLDLSLGNSSSKGNNSQAFGNYNTNVVTDQHMAPESNWRNGGIRPKPVNILPKPCGISNMEGYVRDGYGESEALRLLSQTHLQSPVTNDMHRYGPYRSPVEQQHPQMLHSFPHLHPSNFQVSSSSSNGGRIGSDLSLSMSDQQKWQTGPPHLFATAAAASSGFPPQITRPSSSSSQGWLQKNGFHTLMRPS* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3834 522 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677
Psa2g3834 522 Pfam AP2 domain 253 302 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 SUPERFAMILY DNA-binding domain 253 313 IPR016177 GO:0003677
Psa2g3834 522 MobiDBLite consensus disorder prediction 137 162 - -
Psa2g3834 522 SMART rav1_2 254 317 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 SMART rav1_2 162 224 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 MobiDBLite consensus disorder prediction 10 31 - -
Psa2g3834 522 Gene3D AP2/ERF domain 253 312 IPR036955 GO:0003700|GO:0006355
Psa2g3834 522 Gene3D AP2/ERF domain 161 220 IPR036955 GO:0003700|GO:0006355
Psa2g3834 522 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 520 - -
Psa2g3834 522 ProSiteProfiles AP2/ERF domain profile. 254 311 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 PRINTS Ethylene responsive element binding protein signature 255 266 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 MobiDBLite consensus disorder prediction 492 513 - -
Psa2g3834 522 CDD AP2 162 219 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 CDD AP2 253 313 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 MobiDBLite consensus disorder prediction 491 522 - -
Psa2g3834 522 ProSiteProfiles AP2/ERF domain profile. 162 218 IPR001471 GO:0003700|GO:0006355
Psa2g3834 522 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 520 - -
Psa2g3834 522 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3834 Psa-Chr2 405553997 405557378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3834 1 348 AP2-EREBP Transcription Factor Family AT4G36920 66.575 5.92e-133 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa2g3834 AP2 3.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3834 K09284 - gmx:100786333 728.398