Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3826 ATGGAAGGTGAAGGTGTGAAAGTAGAGAGAGAAACCATGGGAGCTAGAAAGAGAAACGGCGTCGTTGTGGAAGGTGAGAGAAGATACAAAGGAATTCGTATGAGAAAGTGGGGAAAATGGGTTGCGGAAATTCGAGAACCGAATAAACGTTCAAGAATTTGGTTAGGTTCCTATTCTACCCCTGTCGCCGCCGCTAGAGCTTACGACACCGCTGTTTTCTATCTCCGGGGACCGTCTGCGCGTCTTAATTTCCCGGAGCTAGTGGTTGGTGAAAACGCCGCCGTTGTTGCTGCTGGTGGTG 301 0.4983 MEGEGVKVERETMGARKRNGVVVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELVVGENAAVVAAGG 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3826 100 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Psa2g3826 100 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Psa2g3826 100 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 97 - -
Psa2g3826 100 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Psa2g3826 100 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Psa2g3826 100 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Psa2g3826 100 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Psa2g3826 100 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Psa2g3826 100 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Psa2g3826 100 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 11 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3826 Psa-Chr2 404646739 404647350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3826 1 91 AP2-EREBP Transcription Factor Family AT5G67190 74.725 1.48e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g3826 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3826 K09286 - twl:119981284 142.124