Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3807 ATGGATGAGGACATTCTCAACACTTTTGAAAGTGATGAGAGCAGCATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTTCCTCAATTCCACCACCCTTTTTATAACAACAACAACACACATAACGACTTCCCTTATGGAACTTATCCGCAACCACCACTCTCTTATCCTCACCAACCAATGACACCGTCTCTTCAACACAACGGAGTTCAAATTCCATCCGGGAGAATCAACAATGCTTCCTTCTCGTCGTACTCAGATAAGAAAAACTCAATGGCGGCCATGAGAGAGATGATATTCCGTATGGCCGCTATGCAGCCGGTTAATATAGACCCGGAAACAATCAAGCCACCAAAGAGAAAGAACGTGAAGATTTCAAAGGATCCACAAAGTATAGCAGCCAGACACAGAAGAGAAAGGATTAGCCAGAGAATAAGAATCTTGCAGAGATTAGTCCCCGGTGGAACTAAAATGGATACCGCTTCAATGTTAGATGAAGCAATACATTATGTGAAGTTCTTTATTAGTCCCCGGTGGAACTAA 546 0.4249 MDEDILNTFESDESSMDMMAMMMQMEKFPQFHHPFYNNNNTHNDFPYGTYPQPPLSYPHQPMTPSLQHNGVQIPSGRINNASFSSYSDKKNSMAAMREMIFRMAAMQPVNIDPETIKPPKRKNVKISKDPQSIAARHRRERISQRIRILQRLVPGGTKMDTASMLDEAIHYVKFFISPRWN* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3807 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 175 IPR036638 GO:0046983
Psa2g3807 181 CDD bHLH_AtIND_like 127 174 - -
Psa2g3807 181 Pfam Helix-loop-helix DNA-binding domain 133 173 IPR011598 GO:0046983
Psa2g3807 181 SMART finulus 132 181 IPR011598 GO:0046983
Psa2g3807 181 Gene3D - 120 177 IPR036638 GO:0046983
Psa2g3807 181 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 73 175 IPR045843 GO:0003700|GO:0006355
Psa2g3807 181 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 73 175 - -
Psa2g3807 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3807 Psa-Chr2 403102822 403104221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3807 12 175 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 55.080 1.68e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g3807 HLH 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3807 - - gmx:100805427 177.178