Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3804 ATGGAGCAGAGAAAACTTGTGGTTTTGGGTATCCCTTGGGATGTTGACACTGAGGGCTTGAAAGAATACATGAGCAAATATGGTGAACTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGATCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTAGATGATGCCAAGGAAGTATTGTCAGGTGAACATGTTCTTGGTAATAGGATGCTTGAAGTCAAAGTGGCTACACCAAAGGAGGAGATGAGGGCACCAGCCAAAAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACAATCAGTAACAGAAACAACTTTTAGAAGTCATTTTGAGAAATATGGAGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAGATGCATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGAATCTGTGGAGAGTTTGATGTCAGAAACCCATGAACTCGGAGGTACTGCTGTAGTGGTTGATCGAGCTACACCTAAGGAAGATGACATTAAGTCGACTGGCAGGATGTCCCAGGGAGGATATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCACTCGGAGCTCCTACCTTGTACGACCATCCTGGCCCAATTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGTAAAAAGATTTTTGTTGGTCGCCTCCCCCCTGAAGCAAATTCTGAGGATCTCCGTCAATATTTTGGAAGATTTGGCCGTATAGAAGATGTTTACATTCCTAGAGATCCTAAGAGAACAGGTCACAGGGGTTTTGGATTTGTTACCTTTGCTGAAGAAGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCACGAGATCTGTGGACACCAGGTGGCAATAGATTCGGCCACACCTGTTGATGATGCTGGGCCCAGTGAAAATTTTATGATGAGCAGTATGGAACCTTTTGGAGGATATGGTGGTCCATTGCGAAATTATGGGAGGATGTATGGTGGTTTAGACTATGATGATTGGGGTTATGGAGTTCCCAGTGGGAGGCCATCAAGAGTAGATTATCAAGAGCAGCTCGGGAGGCCATCAAGAGCTGATTATCAAGAGCAGCTCGGAAGGCCATCAAGAGCAGATTGGAGGTATAGGCCATACTAG 1152 0.4436 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTETTFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFANAESVESLMSETHELGGTAVVVDRATPKEDDIKSTGRMSQGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFAEEGVADRVSRRSHEICGHQVAIDSATPVDDAGPSENFMMSSMEPFGGYGGPLRNYGRMYGGLDYDDWGYGVPSGRPSRVDYQEQLGRPSRADYQEQLGRPSRADWRYRPY* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3804 383 Gene3D - 220 304 IPR012677 -
Psa2g3804 383 Gene3D - 84 192 IPR012677 -
Psa2g3804 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Psa2g3804 383 MobiDBLite consensus disorder prediction 357 383 - -
Psa2g3804 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Psa2g3804 383 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 383 - -
Psa2g3804 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 281 IPR000504 GO:0003723
Psa2g3804 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Psa2g3804 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Psa2g3804 383 SMART rrm1_1 5 76 IPR000504 GO:0003723
Psa2g3804 383 SMART rrm1_1 93 164 IPR000504 GO:0003723
Psa2g3804 383 SMART rrm1_1 225 296 IPR000504 GO:0003723
Psa2g3804 383 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Psa2g3804 383 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Psa2g3804 383 SUPERFAMILY RNA-binding domain, RBD 223 323 IPR035979 GO:0003676
Psa2g3804 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Psa2g3804 383 Gene3D - 1 83 IPR012677 -
Psa2g3804 383 PANTHER OS01G0945800 PROTEIN 3 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3804 Psa-Chr2 402929674 402935179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3804 6 274 Eukaryotic Initiation Factors Gene Family AT3G16380 24.188 6.35e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3804 K14411 - gmx:100795240 647.121