Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3795 ATGTCGCAGCGATCGGTGCCGGCGCCGTTTTTGACGAAGACGTATCAGATGGTGGATGATTTTGCGACGAAGGATGTGATATCATGGAATGAAAGTGGCGAAAGTTTTGTTGTTTGGAAACATGCGGATTTTGCAAGGGATTTGCTTCCTAAGTATTTTAAACACAATAATTTCTCCAGCTTTGTTCGCCAGCTCAACACATATGGATTCCGAAAAGTTGTGGCAGACAAATGGGAATTCGCAAACGAAAATTTCAAACGAGGCCACAAAGATCTCCTCACCGAAATCAAACGCCGCAAAACCGTATCACAACCGTCGTCACATCCTCCAGAAACCGAAAAAACCAACGCCAACGGCAACAACTCTCCTTCAAACTCCGACGACGTCAACGGAGTCGGATCCACCTCCACAGTCCGATCAACCTCTTCCTCCAATTCAAAAAACCCCGGATCAGTAGAAACAACACTTCCACAGTGCGTCAATTTATCGTCCGAGAACGAGAAACTGAAAAAGGAAAACGAGATATTGAGTTGGGAGTTAGCACGTGCGAAGCACAAGTGCGATGAGTTGGTGTCTTTTCTAAAAGACCGTTTAAACGTGGGACCCGATCAGATCGATCGCATTATGAAAGAAAGAAACTGTGAACCGGTTCAAAATGCGGTTGGTGAAGGTGAAGAAAATGGAAGAGATAGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAAGAAAACTATACAGAGAAAAGAAACAATAATAAAAAAAGAATTTGTGAACAACAATTGGACTTCGGTGGGCCCAGGGCTAAAGTGACAAACAATGTTGTTGACTTTAGTGCTGTCAATGTTGTGAACATGATGAAAAGTGGCAAGATTGCCACCTTTTACAAATAG 888 0.4302 MSQRSVPAPFLTKTYQMVDDFATKDVISWNESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVADKWEFANENFKRGHKDLLTEIKRRKTVSQPSSHPPETEKTNANGNNSPSNSDDVNGVGSTSTVRSTSSSNSKNPGSVETTLPQCVNLSSENEKLKKENEILSWELARAKHKCDELVSFLKDRLNVGPDQIDRIMKERNCEPVQNAVGEGEENGRDSLKLFGVWLKEENYTEKRNNNKKRICEQQLDFGGPRAKVTNNVVDFSAVNVVNMMKSGKIATFYK* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3795 295 Coils Coil 159 186 - -
Psa2g3795 295 Gene3D - 2 101 IPR036388 -
Psa2g3795 295 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3795 295 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Psa2g3795 295 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3795 295 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3795 295 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3795 295 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3795 295 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 283 - -
Psa2g3795 295 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 283 IPR027725 -
Psa2g3795 295 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3795 295 MobiDBLite consensus disorder prediction 105 159 - -
Psa2g3795 295 MobiDBLite consensus disorder prediction 98 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3795 Psa-Chr2 402488401 402491165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3795 2 265 HSF AT4G36990 51.418 3.57e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa2g3795 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3795 K09419 - gmx:100791543 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3795 2 402488401 402491165 Psa4g2026 4 153883730 153888626 PCT