Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3787 CCCATTACCAGACCAAACCCCTCCTCTTCTGTCGGAGGAGGACTCAGTGGTAACGACACGGATGAATATGACTGTGAAAGTGAGGAGGGTGTTGAAGTATTGACAGAAGAAGCTCCAACAAAATCTGTAGCTTCTAGGAGTTCTTCAAAGAGAAGTAGAGCAGCAGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATCAATGAGAAAATGAAGGCTTTACAAAATCTGATACCTAATTCTAACAAGACTGATAAGGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCATTGAAAAATGGATTAAGTTTGCATCCTATGTGCTATCCAGAAGGCTTGCAGCCTCTGTCGTTGTCTCGGTTGAGTATGGAATTGAGTGACGGAAACCGGTCTACCCCTTTAAACATGACATCTACGCTGCCTCATCCCCAAGACAACAACCCTTTGCTCTATGCATCCAATCTTCCTAACAAAAACACATTGACGAGTCAGCCGTCGATGTCCTCCTATCCTTCGTATGTTAACAACAACCTAGAAACTTCTTTTGCGGTGGAATCCCGAATCCCGTCGCATAAAAGACCTCTTCAACAAACTTCAGAGACGGTACACGGTGAAGACATGTTGCAGAACCAGCAATCGAATGCAATCTATTCTGCTACCAATCTATTAGGTGGTTCTCAAGGTGTCGAAGAATTTGAGGCGGGCACGATGGCTGCACCTTCTACTAACAACTCTTTGCAAACGTGTATCGCCGGAAGAGATCAGTCAAATGCAATCATGAGAAATAGTGAGCCAAATGCTATATTCACATCGTAA 855 0.4339 PITRPNPSSSVGGGLSGNDTDEYDCESEEGVEVLTEEAPTKSVASRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLKNGLSLHPMCYPEGLQPLSLSRLSMELSDGNRSTPLNMTSTLPHPQDNNPLLYASNLPNKNTLTSQPSMSSYPSYVNNNLETSFAVESRIPSHKRPLQQTSETVHGEDMLQNQQSNAIYSATNLLGGSQGVEEFEAGTMAAPSTNNSLQTCIAGRDQSNAIMRNSEPNAIFTS* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3787 284 PANTHER TRANSCRIPTION FACTOR SPATULA 12 230 - -
Psa2g3787 284 SMART finulus 59 108 IPR011598 GO:0046983
Psa2g3787 284 Pfam Helix-loop-helix DNA-binding domain 57 103 IPR011598 GO:0046983
Psa2g3787 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Psa2g3787 284 MobiDBLite consensus disorder prediction 1 16 - -
Psa2g3787 284 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 230 IPR031066 -
Psa2g3787 284 Coils Coil 92 112 - -
Psa2g3787 284 MobiDBLite consensus disorder prediction 51 66 - -
Psa2g3787 284 Gene3D - 48 112 IPR036638 GO:0046983
Psa2g3787 284 CDD bHLH_AtPIF_like 56 115 - -
Psa2g3787 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 113 IPR036638 GO:0046983
Psa2g3787 284 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3787 Psa-Chr2 402198920 402201715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3787 18 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.332 2.71e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g3787 HLH 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3787 - - gmx:100793754 337.806