Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3784 ATGGCGGATCACGAAGGTTCAAGCAGGAAGCGTAGGGCAACAAGAGAACCCAAATCCACCTCCCACAGCCAAGCATTAGAGCTTCTCAGATCCCGCCGATCCGGCGACCGTCGTTCCGACGCCGCCAAACCTCAAATCAGGTTAGAAAACCCTATCTACGACACAATCCCCGAGGAAGAGTACACCGCTCTAGTCGCTAGCCGCCGCGATCAATCGCTGTCGTTCATAGTTGACGATGATGGACTCGGTTATGTCGATGAAGGTGAAGAAGAGGATTGGTCCAAAGCTGGTGTCACACGCTCGGAAGACGAATCTGACGGTGAATCGGAGAAGCCGAAACGGAAGAAGGAAAAATCTCAGAGTAAACGTCCTTCTGCTTCTGCTGCCGCTCTTTCAGCTGCTGCTGCTATGATGGGACCGCAGAGAGTTTCGTCCATGTTTACTTCCGCGGTTTTCAAGAAAAATAGAGATGATAAAGTTGCTGATAGCATTGTTGATGATGTTCTCAAGGAATTTGCACCGGATGAGACTGATAGACTCAGTCGGAGAAAACTGCAGTCAAATCCGTCTTCTATTGCCAATGGAGGATTACAGATTAAGCCCTCTTCTGAACCTGTACGAAGTTATTCTTCGCATCAAAATATCTCAATTGCAAAAGTTGATACTGAATCTGTTATGGTTAATAAGGATTTTGAGGATAAGTCTAATGAATCTAGCTTAGTGTTAGAGCCAACTTGTGAAGCAGAAGTTAATGGAAATTTGGGAAATGATGAGTCACAAATGAAGGTGGAGCCTAGTGACTGTCCCTCTCCTAGTAATGGGAATTTAGTTGAAGAGAAAGTCGTGGAGGTGAAAGAAGCTGAAATGGAAGTTAAACCTGCTGTGAAAAAAGAGGGTTTTGTTTTGAATGCGAAAGTTACGGAAGAGGTGGTGGATCCAAAGTTGTGTGCTACTGCTGGTTGGCAGGCTGCAAGGAGTGCTGGTGGTGGTGAGATAAAAACTGCTGATTTGAATAATCAACAACAGTCTGAACTCAAGTTGGAGCCAGAGGGATCATTGCCTTTTTACATACTTGATGCTTATGAGGAGTATTATGGAGCCAATATGGGTACTCTTTATTTGTTTGGAAAGGTCAAAACAGGGAATTCCTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGCAGAGGTGTGTCTATGCTATTCCAAGTACTCCTTTGCGTTCCACTGAGATGATACAACTTGAGAAATATGTCCAAGAGTCTAAAATTACTCCTGCAGATTTCCGTAAAAAGCTGCAAGATGCAGTATCTGATATAAAGAATGAGATAGCAAAACACCTTGTGGATCTGGGCGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAATTATGCATTTGAGCGATCTGACATACCTGCAGGTGAAAATTATGTGGTGAAAATAAATTATCCGTTCAAGGATACAGCACTTCCAGTAGACCTCAAAGGAGAAAGTTTCCGTGCTATTCTTGGAGCTCGAAGCAGTGCACTTGAGCTATTTTTGATTAAAAGAAAGATTAAGGGGCCTACATGGCTACAAGTATCAAACTTTTCTACCTGCTCAGCTTCCCAAAGGGTTAGCTGGTGCAAGTTTGAAGTGACTGTTGACTCTCCTAAAGACATCAGGGTTTCTTCTTCATCTTCCTCAAAAATCACTCTCGTGATTCCTCCTGTGGTTGTCACGGCGATAAACTTGAAAACTATCATAAACGAAAAACAGAACATAAATGAAATTATATCTGCATCTATTGTCAGTTGCAATATGGTTAAGATTGACACTCCTATGCTGGCTTCAGAGTGGAAGAAACCTGGAATGCTGACCCATTTTACTGTTATTCGCAAACCTGATCTGTATATATGGCCAATGGGATTCAACAAGGAGGTCACAGATAGAAACTTAAAAGCTGGGTCACATGTTCTGTGTTTTGAAACCAGTGAGAGAGCTGTGTTAAATCGTCTAATGATAGAATTAAACAAGATGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCTCAGGCTTGCAAGGTTCCAAGCAGCTTGTGGTCTAAACTTGGCCGTCTCAACCGTTCCACAATGCCTAAGCTTGATAGAAGAGGCAAAACATTTGGTTTTGGAGCTGATCCTGCTATCATGTCTTGTGTTGCCGGTCGGCTTCTTTGTGATACATATTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCACCTTGCCAAAACACAGCTCAACCAGTCTCGGAAGGAAGTTGCTCCACATGACGTTCCACAAATGTTCCAATCTACCAAATCCCTGATGGAGCTAATTGAATATGGTGAAACGGATGCATGGCTGTCTATGGAACTCATGTTTTATTTGAGTGTCCTTCCTCTCACACGCCAGTTGACCAATATAAGTGGAAATCTGTGGGGGAAAACTCTTCAGGGTGCCCGGGCCCAGAGGGTGGAGTATCTTTTGTTGCATGAGTTCCATAAAAAGAAATATATTGTTCCAGACAAGTTTTCTAATAATGCAAAAGAAACAAAGTTGACAAAACGCAGAGTAACTCACGGTGTTGATGGTGGCAACTTTGCTGAAGCAGATAACAATGATGCAAACTATCATAATGATGCTTCTGAAAGTGATCATAAGAAAAACAAAAAGGCTTCTTCCTATGCTGGAGGGCTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTACTTCTGGATTTCAACAGTCTATACCCATCCATCATTCAGGAATATAATATCTGCTTCACGACTGTTGAAAGATCGTCAGATGGATCTTTTCCCTGTCTTCCATCTAGTAAAACAACCGGAGTCTTGCCAGAGTTGCTGAGAAAGCTTGTTAAGTGGAGGCGAGATGTAAAGACATGGATGAAGACTGCGTCTGGTCTTAAACGTCAGCAACTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGATTTTCCAACTCAAGATTTTATGCAAAACCGCTGGCTGAGCTCATCACCCTACAAGGAAGGGAGATACTACAAAGCACCGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACCGATTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATATCTAAGAAAGTCATTCAAGAGGTCAACAAGAAATATACATGCTTAGAAATTGATCTTGATGGTTTGTATAAGAGGATGCTACTTCTCAAGAAAAAGAAGTATGCAGCCGTTAAGGTGCAGTTTAAGGATGGCATCCCATATGAGGTTATTGAACGCAAAGGTCTTGATATTGTCCGCCGTGACTGGAGCTTATTAGCAAAAGATTTAGGAGAATTTTGCTTGACTCAAATTTTGTCGGGAGGATCATGCGAAGATGTCGTTGAATCAATTCACAACTCTCTCATGAAGGTTCAAGAAGAAATGCGGAACGGACAAATAGAATTGGAAAAATATGTCATCACAAAGACATTGACTAAACCACCTGAGGCATATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAACAACAAGGTCACACCTCTGGTTGCTCGGTTGGTGATACAATCCCTTATATAATTTGCTGTGAGCAGGGTGGTAGTTCAGGCAGTGGAACCGGAATTGCTCAACGTGCCAGACATCCCGACGAACTAAAACAAGAACAGGGGACATGGCTAATTGACATTGATTACTATTTGTCACAACAGATTCATCCGGTGGTATCACGCCTTTGTGCATCAATTCAAGGCACAAGCCCTGAAAGACTAGCTGATTGTTTAGGGCTGGACACATCAAAGTTTCAACAGAAATCAAGTGAAGCTTTAAAGGATGATCCTACAAGCTCGCTCTTGTTTGCTGGTGATGATGAGGAGAGGTATCAGGGATGTGAGTCGTTGGTATTGTCATGCCCCAGCTGCTCTAGTACATTTGACTGCCCTCCTGTGTTTAAAACAATGTGTATGTTGGGAAATGAAAAGCCAGCCAGCTTAGGCGCAGATGAATCTGACTATAATTTCTGGCTCAAGCTGGGCTGTCCCAAATGCTTTGAAAATGGTGTTGGTAGAATATCTCCTGCAATGATAGCCAATCAGGTCAAGCGGCAAGCAGAGAAGTTTGTTTTAATGTATTATAGAGGTTTACTAATATGTGATGATGAAACATGTAAACATACAACGCGAAGTGTCAGCTTTCGTTTGGTTGGTGATTCTGAGCGAGGAACTGTCTGTCCAAATTATCCTCGCTGCAACGGGCATCTTAATAGAAAGTACACTGAAGCCGACTTGTACAAGCAGCTCTCATATTTTTGTCACGTGTTTGATACCTTTAGCTGTATAGAAAAGATGGAGGCAAAGGCTAGGATACCAATCGAGAAGGAGTTGATAAAAATTAAGCCAATGGTGGAACTTGCTGCATCAACAATACAAAAGATCAGAGACCGTTGTGCCTTTGGGTGGGTGAAGCTGCAGGACTTGGTTGTTACAATTTAA 4620 0.4223 MADHEGSSRKRRATREPKSTSHSQALELLRSRRSGDRRSDAAKPQIRLENPIYDTIPEEEYTALVASRRDQSLSFIVDDDGLGYVDEGEEEDWSKAGVTRSEDESDGESEKPKRKKEKSQSKRPSASAAALSAAAAMMGPQRVSSMFTSAVFKKNRDDKVADSIVDDVLKEFAPDETDRLSRRKLQSNPSSIANGGLQIKPSSEPVRSYSSHQNISIAKVDTESVMVNKDFEDKSNESSLVLEPTCEAEVNGNLGNDESQMKVEPSDCPSPSNGNLVEEKVVEVKEAEMEVKPAVKKEGFVLNAKVTEEVVDPKLCATAGWQAARSAGGGEIKTADLNNQQQSELKLEPEGSLPFYILDAYEEYYGANMGTLYLFGKVKTGNSYQSCCVVVKNMQRCVYAIPSTPLRSTEMIQLEKYVQESKITPADFRKKLQDAVSDIKNEIAKHLVDLGVSTFSMAPVKRNYAFERSDIPAGENYVVKINYPFKDTALPVDLKGESFRAILGARSSALELFLIKRKIKGPTWLQVSNFSTCSASQRVSWCKFEVTVDSPKDIRVSSSSSSKITLVIPPVVVTAINLKTIINEKQNINEIISASIVSCNMVKIDTPMLASEWKKPGMLTHFTVIRKPDLYIWPMGFNKEVTDRNLKAGSHVLCFETSERAVLNRLMIELNKMDSDVLVGHNISGFDLDVLLHRSQACKVPSSLWSKLGRLNRSTMPKLDRRGKTFGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHDVPQMFQSTKSLMELIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNNAKETKLTKRRVTHGVDGGNFAEADNNDANYHNDASESDHKKNKKASSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPCLPSSKTTGVLPELLRKLVKWRRDVKTWMKTASGLKRQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSISKKVIQEVNKKYTCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGIPYEVIERKGLDIVRRDWSLLAKDLGEFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQIELEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGHTSGCSVGDTIPYIICCEQGGSSGSGTGIAQRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQQKSSEALKDDPTSSLLFAGDDEERYQGCESLVLSCPSCSSTFDCPPVFKTMCMLGNEKPASLGADESDYNFWLKLGCPKCFENGVGRISPAMIANQVKRQAEKFVLMYYRGLLICDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYKQLSYFCHVFDTFSCIEKMEAKARIPIEKELIKIKPMVELAASTIQKIRDRCAFGWVKLQDLVVTI* 1540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3784 1539 Gene3D Palm domain of DNA polymerase 897 1122 IPR023211 -
Psa2g3784 1539 Gene3D Helix hairpin bin 973 1017 - -
Psa2g3784 1539 MobiDBLite consensus disorder prediction 29 44 - -
Psa2g3784 1539 CDD POLBc_alpha 904 1307 IPR045846 GO:0003887|GO:1902975
Psa2g3784 1539 MobiDBLite consensus disorder prediction 1 18 - -
Psa2g3784 1539 Pfam DNA polymerase family B 828 1291 IPR006134 GO:0000166|GO:0003677
Psa2g3784 1539 SUPERFAMILY DNA/RNA polymerases 853 1306 IPR043502 -
Psa2g3784 1539 MobiDBLite consensus disorder prediction 88 115 - -
Psa2g3784 1539 PRINTS DNA-directed DNA-polymerase family B signature 928 941 IPR006172 GO:0000166|GO:0003676|GO:0003887
Psa2g3784 1539 PRINTS DNA-directed DNA-polymerase family B signature 1004 1016 IPR006172 GO:0000166|GO:0003676|GO:0003887
Psa2g3784 1539 PRINTS DNA-directed DNA-polymerase family B signature 1057 1065 IPR006172 GO:0000166|GO:0003676|GO:0003887
Psa2g3784 1539 SUPERFAMILY Ribonuclease H-like 350 857 IPR012337 -
Psa2g3784 1539 ProSitePatterns DNA polymerase family B signature. 1059 1067 IPR017964 GO:0000166|GO:0003676
Psa2g3784 1539 TIGRFAM pol2: DNA polymerase (pol2) 52 1289 - -
Psa2g3784 1539 Gene3D - 395 520 - -
Psa2g3784 1539 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Psa2g3784 1539 PANTHER DNA POLYMERASE 341 1536 - -
Psa2g3784 1539 Gene3D - 355 553 - -
Psa2g3784 1539 CDD DNA_polB_alpha_exo 569 820 - -
Psa2g3784 1539 Gene3D - 569 880 IPR036397 GO:0003676
Psa2g3784 1539 Gene3D DNA Polymerase alpha, zinc finger 1331 1525 IPR038256 -
Psa2g3784 1539 Pfam DNA Polymerase alpha zinc finger 1332 1535 IPR015088 GO:0003887|GO:0006260
Psa2g3784 1539 Pfam DNA polymerase family B, exonuclease domain 384 762 IPR006133 -
Psa2g3784 1539 MobiDBLite consensus disorder prediction 173 205 - -
Psa2g3784 1539 MobiDBLite consensus disorder prediction 86 139 - -
Psa2g3784 1539 SMART polmehr3 569 1071 IPR006172 GO:0000166|GO:0003676|GO:0003887
Psa2g3784 1539 Gene3D - 1135 1321 IPR042087 -
Psa2g3784 1539 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 341 1536 - -
Psa2g3784 1539 MobiDBLite consensus disorder prediction 184 205 - -
Psa2g3784 1539 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3784 Psa-Chr2 402076470 402088821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3784 1 1537 Core DNA Replication Machinery Family AT5G67100 59.169 0.0 1807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3784 K02320 - gmx:100798779 2147.09