Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3780 ATGAATTGGATTCGCGGTGATTCACTCGGCAGTGGAAACTTCGCCACCGTCAACTTAGCCAAACACACTAAACCCTCCGTTAACATTCCGTCTCTTACCGCCGTCAAATCATGCAAACTTTCCCATTCGCTTTCTCTCCAAAACGAGAAAAATATATTTGAGCGTTTAGGATCATGCCCACACATTATCCAATACTTTGGTCAGGATCAAACTGTTGAAAACGGGGAAGAGTATTACAATATTTTCCTAGAATATGCAAGCGGCGGAACTCTCAATGACCAGCTCAAGAATCACGGTGGGAAACTCCCAGAAAAACTTGTTCGACATTACACAAGGTCCGTGGTTGAAGGTTTGAAGTATATTCACGAAAACGGTTTTGTTCATTGCGACTTGAAACCACCAAACATTCTCGTATTCGAGAATGGCAACGTAAAGATATCAGATTTCGGTCTTGCAAAAGAGATGGGAGTGGAAGAAGTTAAAAAGATGCAATGTAGAGGAACTCCAATGTTTATGTCACCAGAATCATTGATGGACGGTGTGTATAATTCTCCGGTAGATATTTGGGCCCTAGGTTGCACCGTTGTGGAGATTCTTACCGGAAAACCTGCGTGGAACATAGATTACGACGCAGACATGTTAACGTTGTTGGTTCGAATTGGGGTTCAAAAAGAAGTACCATTAATTCCAGATGAAATCTCAGAAGAAGCAAAGGATTTTCTTGAAAAATGTTTTGTTAGGGATCCACTGAAAAGATGGAGCGCTGATATGCTTTTGAAACACTCTTTTATCTCGGATGATGAAACAATTTCTTCGGTTAAGGAGTCGACATTTTCATCAGCTTCTCCAATTACTCACTTTGAGTATTCAAACTGGAGTTCTTCTACTACTGTTACAACGTTGCTTTACAGTTCAACGGAAGATGAAACTGAGTATTGGTTTTTATCACAAGAAAAGAGTAGTCGACAACTAGCTCATGATGCGAAGCTACTAGATTGTTCGCCAAAACATAGGCTTCTACTACTAGTCCTCATTGCTGAGAAATCGTTAGATTTGTTAGAATCTGATGATTGGTGTTATTTATCACAAGAAAATATTCTTGGACAACTAGTCACCACTGCTGAGAAATCGTTAGCTTTGTCAGAATCTGATGATTGGTGTTATTTATCACAAGAAAAGAGTCTTACACCATTAATTCTCACCGCTGAGAAATCGTTAGATTTTTTAAAATATGATGATTGGTGTTATTTATCACAAAGTTTTATTAGAATATAA 1275 0.3882 MNWIRGDSLGSGNFATVNLAKHTKPSVNIPSLTAVKSCKLSHSLSLQNEKNIFERLGSCPHIIQYFGQDQTVENGEEYYNIFLEYASGGTLNDQLKNHGGKLPEKLVRHYTRSVVEGLKYIHENGFVHCDLKPPNILVFENGNVKISDFGLAKEMGVEEVKKMQCRGTPMFMSPESLMDGVYNSPVDIWALGCTVVEILTGKPAWNIDYDADMLTLLVRIGVQKEVPLIPDEISEEAKDFLEKCFVRDPLKRWSADMLLKHSFISDDETISSVKESTFSSASPITHFEYSNWSSSTTVTTLLYSSTEDETEYWFLSQEKSSRQLAHDAKLLDCSPKHRLLLLVLIAEKSLDLLESDDWCYLSQENILGQLVTTAEKSLALSESDDWCYLSQEKSLTPLILTAEKSLDFLKYDDWCYLSQSFIRI* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3780 424 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Psa2g3780 424 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 316 - -
Psa2g3780 424 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3780 424 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3780 424 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 316 - -
Psa2g3780 424 Gene3D Transferase(Phosphotransferase) domain 1 2 338 - -
Psa2g3780 424 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Psa2g3780 424 CDD STKc_MAPKKK 2 264 - -
Psa2g3780 424 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3780 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3780 Psa-Chr2 401986068 401987342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3780 1 296 MAP Kinase Kinase Kinase AT3G50310 47.557 1.47e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa2g3780 Pkinase 3e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3780 - - mtr:MTR_5g017140 408.297