Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3747 ATGGAACTTAACTTGGATTTGACTTTAGCCTCTGTTCCCAAAACCGTTTCTCATTTCCTCAACGAAGTTTCTCTCACCAAAGACTCATCTCAGAAGCTTTCAATGCTCGATGACTTGGTTCGTAGATTGGAAGAAGAAATGAACAAAGTGCTCGCTTTCAAACGCGAACTTCCTCTCTGCATACTCCTCGTTAACGATGCTATAGCAAGATTGAAGGATGAAAAAGAAAAAGTTAGGTTAATCAAAATGCGAGATCCAGTTTTGGTGAATGAAAACTCTGATAATAAGATGAATTGGATGAGTTCAGTTCAGCTTTGGACTAATCAGACAAAATCGAAGAATGAAGATGGTGATAGGTCTGTGTCACAGAAGAGTAATGGTGGAGGGGTATTTATGTCATTTAATGAAAATACTCGTGTTCCTTTGAAGGAGGTTTCTCAGGTTCCGAGTTTTAGTTTGGTCTCTGAAGTGAGTCATGGAAATTCTAAGAGTGGTTGTGATCGAAGTAGTTCTAGTTCGTCTTTGTTGCGCGTTGAGATACAGAATCAACAGCCGCAGCCACCTCAGCCTTTGCTGCAAAGTTCCAGGAAACAAAGGCGAAGCTGGTCGTCCGAGCTTCATCGCCGATTTGTTGATGCTCTTCAACAGCTTGGTGGAGCACATGCAGCCACTCCTAAACAAATTAGGGAAAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGGCTTCATGTTAGAAGATTCCCAGTTTCTTCAATTGAGGAGGCTAATAAACTCGCCTTATATATGATCGAAGATCAAGATACATCAAAGGGAAATTTATCAGAGTCTGTTTCACCACAGGGTCCTCTTACTCCTATTCTCATTGGAGGATCCGTTAAAGGTCTCTCGAGCCATGGAAGAAACAGCGTGGATGCAGAAGATGAACAATCAGATTGCAGGAATTGGAAAGATGACCGGGAGCAGCAACATGAAGCCGAATAA 1008 0.4167 MELNLDLTLASVPKTVSHFLNEVSLTKDSSQKLSMLDDLVRRLEEEMNKVLAFKRELPLCILLVNDAIARLKDEKEKVRLIKMRDPVLVNENSDNKMNWMSSVQLWTNQTKSKNEDGDRSVSQKSNGGGVFMSFNENTRVPLKEVSQVPSFSLVSEVSHGNSKSGCDRSSSSSSLLRVEIQNQQPQPPQPLLQSSRKQRRSWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPVSSIEEANKLALYMIEDQDTSKGNLSESVSPQGPLTPILIGGSVKGLSSHGRNSVDAEDEQSDCRNWKDDREQQHEAE* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3747 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 254 IPR017930 -
Psa2g3747 335 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Psa2g3747 335 MobiDBLite consensus disorder prediction 156 199 - -
Psa2g3747 335 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 252 IPR006447 GO:0003677
Psa2g3747 335 MobiDBLite consensus disorder prediction 309 335 - -
Psa2g3747 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 331 IPR044787 GO:0003700|GO:0006355
Psa2g3747 335 MobiDBLite consensus disorder prediction 293 335 - -
Psa2g3747 335 MobiDBLite consensus disorder prediction 109 133 - -
Psa2g3747 335 Pfam Myb-like DNA-binding domain 199 250 IPR001005 -
Psa2g3747 335 Gene3D - 196 253 - -
Psa2g3747 335 Coils Coil 36 56 - -
Psa2g3747 335 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3747 Psa-Chr2 398626926 398629624 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3747 1 247 G2-like Transcription Factor Family AT4G37180 46.269 7.26e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa2g3747 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3747 - - pvu:PHAVU_002G021400g 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3747 2 398626926 398629624 Psa2g3747 2 398626926 398629624 ECH