Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3708 ATGGAAGTACTTCCCTGTTCCGGCGTTCAATATGCCGGGGAATCTGATTGCCCTCAACGCGGTTCAGAAACAACTTTTATCTACCAGGAAGAACCTAGTTGCCCTGAAAACACCGAACAAGCTAAATTGGGAGATGATCAACTGAATGAATCACTGCATAAGATTGAAGGGTCAGAGATAGAAATGCAAGATGACAGGACACAGAATGTGTGTGCTTCGTTGACTAATTCGAATTGTCAATGCAATGGAGCTTCATGTTGTGACTGCCAAGTGGAAGATCAAAAGAATTACGGTGGTTTCGTTGATTTTGATGATGAAATGATGAATGAACGTTACCTAACCTCTGAGAATTCTCTTGCTGTTCTTGATACAATTGAAAGTGAATCACCAAACAACGGTAAGGAAGGAGACTTGTCGTTTTCTGAACCCCAGTGGCTAGAGGGGGATGCATCTGTTGCATTGTGGGTCAAGTGGAGAGGGAAATGGCTGGCTGGTATCCGATGTGCAAGGGCCGACTGGCCATTATCAACTTTAAGAGCAAAACCAACTCATGACCGAAAGAAGTATTTTGTCATATTTTTTCCGCACACAAGGATTTATTCTTGGGCAGATACGCTGCTTGTTAGGTCAATTGATGAGTTTCCGCATCCTGTTGCATACAAGACTCATCAGGTAGGACTGAAATTAGTACGGGACTTGACAGCTGCACGACGGTTTATAATGCAAAAGCTAGTGGTTGGCATGTTGACCATCGTCGATCAGTTTCATCTTAATGCTTTAACAGACATTGCCCGTGATGTGAACGTCTGGAAGGCATTCGCCATGGAGGCTTCTCATTCTAATGGTTATTCTGATTTCGGAAGAATGCTTCTAAAGATACACAATAGCATCTTGGGGCATTACATAAGGGCTGACTGGTTACAGAATTCTTCTCACTCTTGGGTTGAAAGATGTCAGAGTACAAATAGTGCTGAAATGGTAGAACTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACAATCTCTGGGACTCACCAGTGCAACCAATATTAGGTTCTGAATGGAAAACCTGGAAGCATGATGTAGCGAAATGGTTCTCAACATCACCTTCCTTGTCTAGCAGCAAAGACACTCCTCGACAGATTTCCGTTGATTCATACCAAACAAACTTTCAGGCTTCTAGAAAAAGGCCTAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCAAAAGTGGAGTTCAAGGGTTCAGATCACACTATTGCTCTTGTGAATGACCCTGGTTTCTTTAAGAATCAGGAGACATTGAGCACATTAACACCTGAGACTTTTAAACATGAAAATACTAGGATGGTATCTATCACAAATGATTTGTCCAGTAATTTGACCAACAAATGGAATGAAATTGTAGTTGAGGCTGCTGATTCTGATTTCTTGCATACAAAAGAAATTGAATCAACACCTATGAATGAAATGGTTGCTGTAAACTCTGTGGATCCAGGTAGTAAGAATCGACAATGTATAGCTTACATTGAAGCCAAAGGAAGACAGTGTGTGAGATGGGCAAATGAGGGAGATGTATACTGTTGTGTGCACTTATCCTCTCGTTTTTTGGCCGGCTCAGCAAACGCCGAAAACCCGGGTCAAGTTGATACTCCTATGTGTGATGGTACAACTGTTGTGGGTACTAAATGTAAGCACCGGGCTCTACCTGGGTCGTTATACTGTAAGAAACATCGGCCTAATGCTGAAACAATACATGTCCTGAGTTTACCCCAAAGTACTATAAAGAGGAAACATGAAGAAAATTATACTGGTTCAGAGAACATGTTCTGTAAAGACATAGTATTGGTAAATGGCGAAGGTTCACTGCAAGTGGATCCAGTTTCATTTATTGCCGGTAATTCATTACATGGAGAAAACAACTTGTCTGAGAAGCCGGTGCATTCTGAAAAGGGTTATGTTGCAATGGAGGCTCCAATCTGTATAGGGTCTCCTCCATTTGATAATAAGAATCCTTGTAGGGAAGCTCCTAAGCGCTATTCCTTATACTGCGAAATCCACCTTCCAAGTTGGCTTAAACGAGCAAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTTTTCTCAGAACTTTTGAGGGGCTGCAGCTCGTGGGAGCAAAAGATACATCTGCATGAAGCCTGTGAGCTTTTTTATAGGCTATTCAAAAGCATTTTATCACTAAGAAACCAAGTTCCTAAGGATGTCCAATTCCAATGGGCTTTGACCGAAGCCTCTAAAGAATTTGGTGTTGGGGAATTTTTTACTAAGTTGGTTCATAGTGAAAAAGAGAGAATCAAATCGATGTGGGGATTTAATGATGACATGAATGTATCCTATGTAATAGAAGAAGAACAAGGACAACAACAACCACTCTTGCTCTTGCCACCCACAATTGATCACAGCTTTGATAATGAAAATGCCATTAAGTGTAAGATCTGTTCAACACAATTTCCGGATGACCAAACACTCGGTAACCATTGGATGGACAGTCATAAGAAGGAAGCACAGTGGCTGTTTAGAGGCTATGCATGTGCCATTTGTCTGGATTCTTTTACTAATAAGAAACTATTGGAAACCCATGTTCAGGAGAGACATCATGTGCAGTTTGTCGAACAGTGCATGCTTCTCCAGTGCATTCCTTGTGGGAGTCATTTTGGAAATTCCGAACAATTATGGCAGCATGTTTTATCATCTCATCATGTTGATTTTAAGCCATCAAAAGCTCCCGAGCAGCAAACTTTCTCTACTGGCGAAGGTTCACTTGTAAAACATGACCAGGGAAATTCGGCCGCTTTGGAAAATAATTCTGAGAATCCAGGTGGTCCACGGAGGTTTATTTGCAGGTTTTGTGGGTTGAAATTTGATTTACTACCCGACCTAGGACGACATCATCAAGCTGCTCATATGGGGCCCAATCTGGTTAGCAACCGTCCCGCTAAGAGGGGGGTTCGCTATTATGCATATAAACTAAAAACTGGCAGGCTAAGCCGCCCTAGATTTAAAAAAGGTTTGGCAGCCGCAGCCTCATTAAGGATGAGAAATAAAGCTACTGCCAATTTAAAGCGATGCATTCAGGCAACAAAGTCAATCGGTGTGGAAGAAACAACCGAGCGACCTCATATAACAGAAACAACAAATATTAGTGGATTGACAGAACATCAATGTTCAGCTGTTGCCAAAATTTTGTTTTCAGAAATTCAGAAAACTAAACCTCGGCCTAACAATCTTGATATTTTATCAGTTGCTCGCACTACTTGCTGCAAAGTTAATCTAGTAGCATCATTGGAAGAGAAATTCGGAGCTCTACCTGAAAAGCTCTATTTAAAGGCAGCAAAACTTTGCAGTGAGCGTAATGTTGTTGCAAAATGGCACCATGAGGGATTTGCTTGTCCCCGAGGTTGCAACTTGTTGAAGGATCAAGGCTCACAATCTCCTTTAGAATCTCTTCCTAGTGGTTTCGTAATGCCAAAATCTGTAAATTTGTCTGATCCTACGTGTGATGAGTGGGATGTGGATGAGTTTCACTGCATAATCGATTCACAAAGTTTACAATTAGGTTCACGGCGAAGGGCTATTGTATTGTGTGATGACATTAGCTTTGGGAAGGAGTCAGTTCCTGTCATTTGTGTAGTAGATCAAGAACTTCTACATTCTCTAAATGAGCATGGGTTAAATGAGCAAGATATAATCTCTTCTAAACCTTGGGAGAGTTTCTCGTATGTTACGAAGCCAATAATTGATCAATCCCTTGGTTCTGATTCAGAGTGTCCACAATTGGGATGTGCCTGCTCATATTCTACCTGCGGTCCTGAAACATGTGATCATGTATACCTATTTGGTAATGACTATGCTGATGCAAAAGACATAGTTGGGAAACCAATGCGTGGCAGATTCCCATATGATGCAAATGGTCGAATAATATTGGAGGAAGGTTACCTTGTCTATGAGTGTAACCATATGTGCAGATGCAACAAATTCTGTCCAAACAGAATATTACAGAACGGAGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCGGTAAGGGCCGGAGAAACTATTCTACGCGGAACATTTGTGTGCGAGTACATAGGAGAGGTTTTAGATGTACAGGAGGCACACCGCAGGCGCGAAAGATACGGCACAGAGAATTGCAGTTATTTCTACGACATCAATACTCGAGTTAATGATATGAGCAGATTGATTGAAGAACAGGTTCAGTATGTGGTTGATGCTACTAAATATGGAAATGTGTCGAGGTTCATCAATCATAGCTGTTCACCCAATCTTGTGAGTCACCAAGTTCTTATTGAGAGCGTGGATTGTGAGCGTTCGCACATTGGTTTTTATGCAAATCGAGATATTGCTGTAGGCGAAGAGCTGACATATGGCTTTCAGTATGAGCTTGTGCCCGGTGAAGGAACTCTGTGTCTGTGTGCATCATCAAATTGTCGGGAACGACTTAACTAG 4539 0.4157 MEVLPCSGVQYAGESDCPQRGSETTFIYQEEPSCPENTEQAKLGDDQLNESLHKIEGSEIEMQDDRTQNVCASLTNSNCQCNGASCCDCQVEDQKNYGGFVDFDDEMMNERYLTSENSLAVLDTIESESPNNGKEGDLSFSEPQWLEGDASVALWVKWRGKWLAGIRCARADWPLSTLRAKPTHDRKKYFVIFFPHTRIYSWADTLLVRSIDEFPHPVAYKTHQVGLKLVRDLTAARRFIMQKLVVGMLTIVDQFHLNALTDIARDVNVWKAFAMEASHSNGYSDFGRMLLKIHNSILGHYIRADWLQNSSHSWVERCQSTNSAEMVELLKEELFDSILWNDVNNLWDSPVQPILGSEWKTWKHDVAKWFSTSPSLSSSKDTPRQISVDSYQTNFQASRKRPKLEVRRADTHASKVEFKGSDHTIALVNDPGFFKNQETLSTLTPETFKHENTRMVSITNDLSSNLTNKWNEIVVEAADSDFLHTKEIESTPMNEMVAVNSVDPGSKNRQCIAYIEAKGRQCVRWANEGDVYCCVHLSSRFLAGSANAENPGQVDTPMCDGTTVVGTKCKHRALPGSLYCKKHRPNAETIHVLSLPQSTIKRKHEENYTGSENMFCKDIVLVNGEGSLQVDPVSFIAGNSLHGENNLSEKPVHSEKGYVAMEAPICIGSPPFDNKNPCREAPKRYSLYCEIHLPSWLKRARNGKSRIVSKEVFSELLRGCSSWEQKIHLHEACELFYRLFKSILSLRNQVPKDVQFQWALTEASKEFGVGEFFTKLVHSEKERIKSMWGFNDDMNVSYVIEEEQGQQQPLLLLPPTIDHSFDNENAIKCKICSTQFPDDQTLGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNSEQLWQHVLSSHHVDFKPSKAPEQQTFSTGEGSLVKHDQGNSAALENNSENPGGPRRFICRFCGLKFDLLPDLGRHHQAAHMGPNLVSNRPAKRGVRYYAYKLKTGRLSRPRFKKGLAAAASLRMRNKATANLKRCIQATKSIGVEETTERPHITETTNISGLTEHQCSAVAKILFSEIQKTKPRPNNLDILSVARTTCCKVNLVASLEEKFGALPEKLYLKAAKLCSERNVVAKWHHEGFACPRGCNLLKDQGSQSPLESLPSGFVMPKSVNLSDPTCDEWDVDEFHCIIDSQSLQLGSRRRAIVLCDDISFGKESVPVICVVDQELLHSLNEHGLNEQDIISSKPWESFSYVTKPIIDQSLGSDSECPQLGCACSYSTCGPETCDHVYLFGNDYADAKDIVGKPMRGRFPYDANGRIILEEGYLVYECNHMCRCNKFCPNRILQNGVRVKLEVFKTEKKGWAVRAGETILRGTFVCEYIGEVLDVQEAHRRRERYGTENCSYFYDINTRVNDMSRLIEEQVQYVVDATKYGNVSRFINHSCSPNLVSHQVLIESVDCERSHIGFYANRDIAVGEELTYGFQYELVPGEGTLCLCASSNCRERLN* 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3708 1512 ProSiteProfiles Zinc finger C2H2 type domain profile. 964 992 IPR013087 -
Psa2g3708 1512 Pfam SET domain 1368 1486 IPR001214 GO:0005515
Psa2g3708 1512 Pfam Pre-SET motif 1217 1349 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa2g3708 1512 ProSitePatterns Zinc finger C2H2 type domain signature. 897 919 IPR013087 -
Psa2g3708 1512 ProSiteProfiles Zinc finger C2H2 type domain profile. 895 924 IPR013087 -
Psa2g3708 1512 ProSitePatterns Zinc finger C2H2 type domain signature. 966 987 IPR013087 -
Psa2g3708 1512 SUPERFAMILY SET domain 1208 1502 IPR046341 -
Psa2g3708 1512 ProSiteProfiles Pre-SET domain profile. 1278 1354 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa2g3708 1512 Pfam Zinc finger C2H2-type, 3 repeats 863 988 IPR040689 -
Psa2g3708 1512 Gene3D Classic Zinc Finger 821 893 - -
Psa2g3708 1512 SMART set_7 1357 1495 IPR001214 GO:0005515
Psa2g3708 1512 ProSitePatterns Zinc finger C2H2 type domain signature. 829 850 IPR013087 -
Psa2g3708 1512 Gene3D SET domain 1195 1493 IPR046341 -
Psa2g3708 1512 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1511 - -
Psa2g3708 1512 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1511 - -
Psa2g3708 1512 ProSiteProfiles Zinc finger C2H2 type domain profile. 861 884 IPR013087 -
Psa2g3708 1512 SMART preset_2 1214 1341 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa2g3708 1512 SMART c2h2final6 861 884 IPR013087 -
Psa2g3708 1512 SMART c2h2final6 964 987 IPR013087 -
Psa2g3708 1512 SMART c2h2final6 827 850 IPR013087 -
Psa2g3708 1512 SMART c2h2final6 895 918 IPR013087 -
Psa2g3708 1512 ProSiteProfiles SET domain profile. 1357 1489 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3708 Psa-Chr2 396909742 396921277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3708 110 1512 C2H2 Transcription Factor Family AT2G23740 50.281 0.0 1364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa2g3708 Pre-SET 1.2e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3708 2 396909742 396921277 Psa2g3708 2 396909742 396921277 ECH