Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3695 ATGGGACCTCAAGGTGTGAATTATGTCATATGGCAGTTTGTTTTGACCATTGTAATTGTTATCTTTTTTACTCCAAAACTTAGTTCTGCCAAACAATCTAAATTAATGGGTTTGAATATGAATATGATTGATCGTTGTTGGAGGCCAAATTCAGAATGGAGGAGGCAAAGACAACAAATAGCGACTTGCTCTATAGGCTATGTTGGAAAAATGACAAACAACATTGGCTATGTTGGAAAAATGACAAACAACATTGGTAAAGACCTCATACAATATGAAGTTACTGACCCAAATGATGATCCTATAAACCCTAAACTAGGTACATTGAGATACGGAGCCTCTGTAATTCAAGGTAAAGTATGGATCACATTTCAAAAAGACATGAACATTAGACTCAACAAACCCCTTCTCATTAGTAGTTTCACTACTATTGATGGTCGTGGTGTCAATATCCACATTGCTAACAATGCATGTTTGATGATATTCAAGACCACCAACATAATCATTCATAGCATTCGAATTCATCACTGCAAAGCTCAAGCTCCAGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCATTTAGGCCCAGTAGATGGAGATGCAATAAGATTGGTCACTGCTTCAAAAATTTGGATTGATCATAATACTCTTAATGATTGTGAAGATGGTCTTCTTGATGTCACCCGAGGTTCTAGTAACGTGACGATATCCAACAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGTCATGATGATGGATATGTGAGAGACAAAGACATGAAAGTTACTGTTGTGTATAATCATTTTGGACCTAATTGCAACCAAAGAATGCCTAGGATTCGTCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGATGGATGCAATATGCCATTGGGGGAAGTATGGGGCCTAGTCTGAAAAGTGAGGCTAACCTCTTCATAGCACCAAAAGTTGGAAGTAAGGAGATAACATGGAGACAAAATGGTCAAACAAATGGGGACAAATGGGAATTTCATTCCGTAAGAGATGCATTTGAAAATGGAGCCTCTTTTGAGGTAACAAATGGTGGGCGTGTGCCAAAGCCAAATTATAGCAAAGACGAATGA 1122 0.3815 MGPQGVNYVIWQFVLTIVIVIFFTPKLSSAKQSKLMGLNMNMIDRCWRPNSEWRRQRQQIATCSIGYVGKMTNNIGYVGKMTNNIGKDLIQYEVTDPNDDPINPKLGTLRYGASVIQGKVWITFQKDMNIRLNKPLLISSFTTIDGRGVNIHIANNACLMIFKTTNIIIHSIRIHHCKAQAPGMVMGPNGKVIHLGPVDGDAIRLVTASKIWIDHNTLNDCEDGLLDVTRGSSNVTISNNWFREQDKVMLLGHDDGYVRDKDMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEITWRQNGQTNGDKWEFHSVRDAFENGASFEVTNGGRVPKPNYSKDE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3695 373 SMART amb_all 127 324 IPR002022 -
Psa2g3695 373 PANTHER PECTATE LYASE 18-RELATED 73 372 IPR045032 GO:0030570
Psa2g3695 373 PANTHER PECTATE LYASE 18-RELATED 5 76 IPR045032 GO:0030570
Psa2g3695 373 PANTHER PECTATE LYASE 5 76 - -
Psa2g3695 373 PANTHER PECTATE LYASE 73 372 - -
Psa2g3695 373 Gene3D - 40 373 IPR012334 -
Psa2g3695 373 Pfam Pectate lyase 137 318 IPR002022 -
Psa2g3695 373 SUPERFAMILY Pectin lyase-like 32 366 IPR011050 -
Psa2g3695 373 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Psa2g3695 373 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Psa2g3695 373 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Psa2g3695 373 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Psa2g3695 373 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Psa2g3695 373 PRINTS Pollen allergen Amb family signature 341 365 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3695 Psa-Chr2 396147835 396149491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3695 81 328 Polysaccharide Lyase AT5G09280 71.371 1.30e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3695 K01728 - gmx:100780437 624.009