Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3694 ATGGGACCTCAATGTGTGAATTATGTCATATGGCAATTTGTTTTGACCATTGTAATTGTTATCTTTTTTGTTCCAAAACTTAGTTCTGCCAAACAATCTAAATTAATGGGTTTGAGTATGAATATGATTGATCGCTGTTGGAGGCCAAATTCAGAATGGAGGAGGCAAAGACAACAAATAGCGACTTGCTCTATAGGCTATGTTGGAAAAATGACAAACAACATTGGCTATGTTGGAAAAATGACAAACAACATTGGTAAAGACCTCATACAATATGAAGTTACTGACCCAAATGATGATCCTATAAACCCTAAACTAGGTACATTGAGATACGGAGCCTATGTAATTCAAGGTAAAACAACCAACATATTCATTCATAGCATTCAAATTCATCACTGCAAAGCTCAAGCTCCGGGGATGGTGATGGGGTCTAATAGAAAGGTAATTCATTTAGGTCCAGTAGATGGAGATGCAATAAGATTGGTCACTGCTTCAAAAATTTGGATTGATCATAATACTCTTAATGATTGTGAAGACGGTCTTCTTGATGTCACCCGAGGTTCTAGTAACATGACGATATCCAACAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGTCATGATGATGGATATGTGAGAGACAAAAACACGAAAGTTACTATTGGGTATAATCATTTTGGACCTAATTGCAACCAAAGAATGCCTAGTATGAGGCCTAGTCTAAAAAGTGAGGCTAACCTCGTCATAGCACCAAAAGTTGGAAGTAAGGAGATAACATGGATACAAAATGGTCAAACAAATGGGGACAAATGGGAATTTCATTCCGTAAGAGATGCATTTGAAAATGGAGCCTCTTTTGAG 867 0.3691 MGPQCVNYVIWQFVLTIVIVIFFVPKLSSAKQSKLMGLSMNMIDRCWRPNSEWRRQRQQIATCSIGYVGKMTNNIGYVGKMTNNIGKDLIQYEVTDPNDDPINPKLGTLRYGAYVIQGKTTNIFIHSIQIHHCKAQAPGMVMGSNRKVIHLGPVDGDAIRLVTASKIWIDHNTLNDCEDGLLDVTRGSSNMTISNNWFREQDKVMLLGHDDGYVRDKNTKVTIGYNHFGPNCNQRMPSMRPSLKSEANLVIAPKVGSKEITWIQNGQTNGDKWEFHSVRDAFENGASFE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3694 289 SMART amb_all 84 288 IPR002022 -
Psa2g3694 289 Gene3D - 116 289 IPR012334 -
Psa2g3694 289 Gene3D - 40 115 IPR012334 -
Psa2g3694 289 PANTHER PECTATE LYASE 18-RELATED 5 76 IPR045032 GO:0030570
Psa2g3694 289 PANTHER PECTATE LYASE 18-RELATED 73 118 IPR045032 GO:0030570
Psa2g3694 289 PANTHER PECTATE LYASE 18-RELATED 238 288 IPR045032 GO:0030570
Psa2g3694 289 PANTHER PECTATE LYASE 18-RELATED 119 240 IPR045032 GO:0030570
Psa2g3694 289 SUPERFAMILY Pectin lyase-like 91 288 IPR011050 -
Psa2g3694 289 Pfam Pectate lyase 116 240 IPR002022 -
Psa2g3694 289 PANTHER PECTATE LYASE 73 118 - -
Psa2g3694 289 PANTHER PECTATE LYASE 238 288 - -
Psa2g3694 289 PANTHER PECTATE LYASE 119 240 - -
Psa2g3694 289 PANTHER PECTATE LYASE 5 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3694 Psa-Chr2 396091976 396093580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3694 81 260 Polysaccharide Lyase AT5G09280 50.000 1.79e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3694 K01728 - gmx:100780437 400.979