Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3683 ATGTCAAGCGGTTTTGGAGGATCAATGAGATCAGCGACTGCGCCGAATCCATCATGTTCTTCGGGGAACAGTTCAAACAACGATGCCGGTGATTTCGAATGTAACATATGTTTTGATTTGGCTCAGGATCCTGTGATCACACTTTGTGGCCATTTGTTCTGTTGGCCATGTCTTTATAGGTGGTTACATCATCATTCTCATTCTCAAGAATGTCCTGTTTGCAAAGCACTTGTTCAGGAAGAGAAATTGGTTCCTCTTTACGGTAGAGGAAAATCGCAGACTGATCCGCGGACTAAATCGTATCCTGGAATGGAGATTCCTCGTCGTCCTTCGGGACAGAGGCCGCAGACGGCCAATCCCCCTCCTCCTCCCGAAGGGAATTTCGCGGGGGTTGGATTGATGGGGGGTTTTATTCCGATGGCGACTGCTAGATTCGGAAACTTTTCGCTATCGACAGGTTTAGGTGGGTTGGGCGGGTTTCTCCCGTCATTGTTCAATATTCACTTTCATGGTTTTCAGGATGGGACTGTTTATGGGACAACATCTGGTTATCCCATCGGGTTTAACCCGTTTCAGGGTGGGAACGCGAGAGGTTTTAATTCGCACGAGACAGGACAGGTGAATCGGCAGGAGGACAATGTTTTGAAGAATTTGCTTATGTTGATTGGAGTTCTCGTTCTTCTTACGGTTATTTTTGTTATGTGA 705 0.4681 MSSGFGGSMRSATAPNPSCSSGNSSNNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKSQTDPRTKSYPGMEIPRRPSGQRPQTANPPPPPEGNFAGVGLMGGFIPMATARFGNFSLSTGLGGLGGFLPSLFNIHFHGFQDGTVYGTTSGYPIGFNPFQGGNARGFNSHETGQVNRQEDNVLKNLLMLIGVLVLLTVIFVM* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3683 234 MobiDBLite consensus disorder prediction 87 121 - -
Psa2g3683 234 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Psa2g3683 234 CDD RING-HC_AtRMA_like 32 76 - -
Psa2g3683 234 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Psa2g3683 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 96 IPR013083 -
Psa2g3683 234 SMART ring_2 34 74 IPR001841 -
Psa2g3683 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3683 234 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Psa2g3683 234 SUPERFAMILY RING/U-box 30 87 - -
Psa2g3683 234 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3683 Psa-Chr2 394941249 394942709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3683 23 232 C3H Transcription Factor Family AT2G23780 60.829 5.66e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3683 K10666 - gmx:100814783 343.584