Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3682 CGTATCGCACTACTTCAGGAGGCTCAAGAGCGGCGTTTTCAGCAGCTTGAGTGTCGTATCAAAGAGTGTCGTGCTGATGCAGATCACAGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACAACAGCGTATCAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCAACGAGTTTCGCACGGAGTGTCGTGTGGAGACTGAGCAGCGCATTAAGGAGTGTCATGCGGAGACTAAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATTGTGCGGCTGCAGGCCAGCATATCAAAGAGTGCCGAGAGGAGGCAGAGCAGCGTATCAACGAGTTTCGTGGGGATCCTGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACTGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGAGGCTACAGAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCATTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGACCAGCGTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAGCGTATCAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCAACGAGTTTCGCGCGGAGTGTCGCGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCAGCGTATCAACGAGTTTCGCGCGGATCCAGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACGGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGAGGCTACAGAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGTGTATCGCACTACTTCAGGAGGCTCAAGAGCGGCGTTTCCAGCAGCTTGAGTGTCGTATCAAAGAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAATGTATTAAGGAGTGTCGCGCAGAGGCAGACCAGCTTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAAGAACGTATCAAGAAGCTTCGTGCGGATGTAGAGCATCGTATCAACAAGTTTCGCGCGGAGGCAGCGTATCAAGGAGTGTCTAGAGGAGGCAGAGCAGCGTATCAACGAGTTTCGCGCGGTTTGGGAGGAACAATGAGATCAGCGACTGCACCAAATCCATCATGTTCGTCGCGGAACCGTTTCAATGACGATGCCTGTGATTTTGAATGTAACATTTGTTTCGATTTTGCTCAGGATCCAGTGATCACACTTTGTGGTCATTTATTCTATTGGCCATGTCTTTATAAGTGGTTACATCATCGCTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCTAAGAACGGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAATGCGTTTGTCTCGTGAGGCTACAGAACAGCATTTCAAGGAGTATATAAATCAGTGTATTGAGGAATTTTATGTGGCTCGAGAGCAGCATTACCTGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCACAAAGGCAGACCAGCGTATCAGGGAGTGTCACGGAGAGTATCGTGCGGATGCAGAACAGCGTATCAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCAACGAGTTTCGCACGGAGAGTCGCGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTAAGCAGTGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAAGGAGTGCCGAGATGAGGCTGAGCAGCTGATCACACTTTGTGGTCATTTATTCTTTTGGCCGTGTCTTTATAAGTGGTTACATCATCGTTCTTATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTAGGGAAGAGAAGTTGGTTCCTCTTTATGGTAAAGAAAGATCGGTAACTGATCCCAGAACGGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAATGCGTTTGTCTCGTGAGGCTACAGAACATCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGACCAGCGTATCAGGGAGTGTCACGGAGAGTATCGTGCGGATGCAGAACAGCGTATCAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCAACGAGTTTCGTGCGGAGTGTCCCGTGGAGACTGAGCAGCGCATCAAGGAGTGTCCTCAGGATCCAGTGATCACACTTTGTGGTCATTTATTTTGTTGGCCATGTCTCTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAAAAGGGAGATTCCTCCTTGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAATGTGTTTGTCTCGTGAGGCTAGAGAACATCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGCACTACTTCAGGAGGCTCAAGAGCGGTGTTTCCAGCAAATTGAGTGTCGTATCAAAGAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACAGCAGCGTATCAACGAGTTTCGCGCGGAGTGTCGCGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGTAGGGCAGCGTATCAAGGAGTGCCGAGAGAGGCAGAGCAGCGTATCAACGAGTTTCGCGCGGACGGGAGTGGTCGCTTGGAATGAAACGCGCATCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGTAGGACAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCGGCGTATCAAGGAGTGTCATGCAGAGGCAAAGCATCTTATTAATGAGTGTCGTGCGGAGTATCGTTCGGTCGCAGAGCGGCTTATCAAAGAGAGTCGTGCGGATGCAGAGCGGTGCATCCAGAAGTGTCGTGTTGAGTACCGTGCGGAGACAGAGCTGCTATTCCAGACTATCAACAATTAG 3774 0.496 RIALLQEAQERRFQQLECRIKECRADADHRIKKFRAEAEQQQRIKKLRADAEQRINEFRTECRVETEQRIKECHAETKQRIKECRVEYCAAAGQHIKECREEAEQRINEFRGDPVITLCGHLFCWPCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGRSVTDPRTEIPPRPSDIHTLFASLEQTRLSREATEQRFKEYIDQCIEEFCVAQEQHYRIKKFRAEAEQRIKECRAEADQRIRECRAEYRADAEQRIKKLRADAEQRINEFRAECRVETEQRIKECRAETEQRIKECRVEYGAAAGQRIKECREEAEQRINEFRADPVITLCGHLFCWPCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGRSVTDPRTEIPPRPSDIHTLFASLEQTRLSREATEQRFKEYIDQCIEEFCVAQEQCIALLQEAQERRFQQLECRIKECRADADYRIKKFRAEAEQCIKECRAEADQLIRECRAEYRADAEERIKKLRADVEHRINKFRAEAAYQGVSRGGRAAYQRVSRGLGGTMRSATAPNPSCSSRNRFNDDACDFECNICFDFAQDPVITLCGHLFYWPCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGRSVTDLRTEIPPRPSDIHTLFASLEQMRLSREATEQHFKEYINQCIEEFYVAREQHYLIKKFRAEAEQRIKECRTKADQRIRECHGEYRADAEQRIKKLRADAEQRINEFRTESRVETEQRIKECRAETKQCIKECRVEYGAAAGQRIKECRDEAEQLITLCGHLFFWPCLYKWLHHRSYPQECPVCKGVVREEKLVPLYGKERSVTDPRTEIPPRPSDIHTLFASLEQMRLSREATEHRFKEYIDQCIEEFCVAQEQRYRIKKFRAEAEQRIKECRAEADQRIRECHGEYRADAEQRIKKLRADAEQRINEFRAECPVETEQRIKECPQDPVITLCGHLFCWPCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGRSVTDPKREIPPCPSDIHTLFASLEQMCLSREAREHRFKEYIDQCIEEFCVAQEQRIALLQEAQERCFQQIECRIKECRADADYRIKKFRAEAEQQQRINEFRAECRVETEQRIKECRAETEQRIKECRVEYGAAVGQRIKECRERQSSVSTSFARTGVVAWNETRIKECRAETEQRIKECRVEYGAAVGQRIKECREEAERRIKECHAEAKHLINECRAEYRSVAERLIKESRADAERCIQKCRVEYRAETELLFQTINN* 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3682 1257 SUPERFAMILY RING/U-box 112 157 - -
Psa2g3682 1257 SUPERFAMILY RING/U-box 322 369 - -
Psa2g3682 1257 SUPERFAMILY RING/U-box 945 993 - -
Psa2g3682 1257 Pfam Zinc finger, C3HC4 type (RING finger) 561 602 - -
Psa2g3682 1257 PANTHER RING ZINC FINGER PROTEIN-RELATED 536 634 - -
Psa2g3682 1257 PANTHER RING ZINC FINGER PROTEIN-RELATED 110 175 - -
Psa2g3682 1257 PANTHER RING ZINC FINGER PROTEIN-RELATED 321 387 - -
Psa2g3682 1257 PANTHER RING ZINC FINGER PROTEIN-RELATED 774 836 - -
Psa2g3682 1257 PANTHER RING ZINC FINGER PROTEIN-RELATED 945 1010 - -
Psa2g3682 1257 Coils Coil 681 701 - -
Psa2g3682 1257 ProSiteProfiles Zinc finger RING-type profile. 311 357 IPR001841 -
Psa2g3682 1257 Coils Coil 249 280 - -
Psa2g3682 1257 Coils Coil 223 243 - -
Psa2g3682 1257 SMART ring_2 769 805 IPR001841 -
Psa2g3682 1257 SMART ring_2 89 144 IPR001841 -
Psa2g3682 1257 SMART ring_2 562 602 IPR001841 -
Psa2g3682 1257 SMART ring_2 935 980 IPR001841 -
Psa2g3682 1257 SMART ring_2 311 356 IPR001841 -
Psa2g3682 1257 Coils Coil 433 453 - -
Psa2g3682 1257 Coils Coil 910 934 - -
Psa2g3682 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 948 992 IPR013083 -
Psa2g3682 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 368 IPR013083 -
Psa2g3682 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 774 817 IPR013083 -
Psa2g3682 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 156 IPR013083 -
Psa2g3682 1257 Coils Coil 37 68 - -
Psa2g3682 1257 CDD RING-HC_AtRMA_like 560 604 - -
Psa2g3682 1257 ProSiteProfiles Zinc finger RING-type profile. 935 981 IPR001841 -
Psa2g3682 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 629 IPR013083 -
Psa2g3682 1257 Coils Coil 6 26 - -
Psa2g3682 1257 ProSitePatterns Zinc finger RING-type signature. 119 128 IPR017907 -
Psa2g3682 1257 SUPERFAMILY RING/U-box 770 811 - -
Psa2g3682 1257 Coils Coil 707 731 - -
Psa2g3682 1257 ProSitePatterns Zinc finger RING-type signature. 331 340 IPR017907 -
Psa2g3682 1257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 774 836 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3682 1257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 945 1010 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3682 1257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 321 387 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3682 1257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 536 634 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3682 1257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 110 175 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3682 1257 Pfam Zinc finger, C3HC4 type (RING finger) 99 144 IPR018957 GO:0046872
Psa2g3682 1257 Pfam Zinc finger, C3HC4 type (RING finger) 311 356 IPR018957 GO:0046872
Psa2g3682 1257 ProSiteProfiles Zinc finger RING-type profile. 769 806 IPR001841 -
Psa2g3682 1257 Coils Coil 488 508 - -
Psa2g3682 1257 Coils Coil 462 482 - -
Psa2g3682 1257 ProSitePatterns Zinc finger RING-type signature. 955 964 IPR017907 -
Psa2g3682 1257 ProSiteProfiles Zinc finger RING-type profile. 562 603 IPR001841 -
Psa2g3682 1257 ProSiteProfiles Zinc finger RING-type profile. 99 145 IPR001841 -
Psa2g3682 1257 Coils Coil 1193 1213 - -
Psa2g3682 1257 Coils Coil 884 904 - -
Psa2g3682 1257 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 752 808 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Psa2g3682 1257 SUPERFAMILY RING/U-box 559 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3682 Psa-Chr2 394918511 394923389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3682 774 836 C3H Transcription Factor Family AT2G23780 59.420 1.29e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3682 K10666 - gmx:100814783 152.91