Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3680 ATGCTTGAGTGTCGTATCAAAGAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGCCCAGCGTATCAGGAAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAGCGTATAAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCAACGTGTTTCGCGTGGAATGTCGCGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAACGAGTTTCGCGCGGATCCAGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTCATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAATTGATCCAAGAACGAAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGGGAGCTTAGAGCAAATGTGTTTGTCTCGTGAGGCTACACAACAGTGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGCACTACTTCATGAGGCTCAAGAGCGGCATTTCCAGCAGCTTGAATGTCGTATCAAAGAGTGTCGTGCTGATGCATATTACCGGATAAAAAAGTTTTGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCGGAGGCATACCAGCTTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAATGTATCAAGAAGCTTCGTGCAGATGCAGAGCAACGTATATCCAAGTTTCGCGCGGAGTTTCGCGTGGAGACTGAGCAGCGCACCAAGGAGTGTCGTGCGGAGACTAAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCAGCGTATCAACGAGTTTCGCGCGGATCCAGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACGGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAATGCGTTTGTCTCGTGAGGCTACAGAACAACGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGCACTACTTCAGGAGGCTCAAGAGCGGCGTTTCCAGCAGCTTGAGTGTCGTATCAAAGAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGACCAGCGTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAGCGTATCAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCAACGAGTTTCGCGCGGAGTGTCGTGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTAAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCAGCGTATCAACGAGTTTCGCGCGGATCCAGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACGGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAATGCGTTTGTCTCGTGAGGCTACAGAACAACGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGCCCAGCGTATCAGGGAGTGTCGCCCAGAGTATCGTGCGGATGCAGAACAGCGTATAAAGAAGCTTCGTGCGGATGCAGAACAGCCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCAGCTGCAGGGCAGCGTATCAACGAGTTTCGCGCGGTTTGGGAGGAACAATGAGATCAGCGACTGCACCGAATCCATCATGTTCGTCGGGTAACCGTTTCAATGACGATGCCTGTGATTTTGAATGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACGAAGATTCCTCCTCTGCCTTCCGACATTCATACGTTGTTTGGGAGCTTAGAGCAAATGCGTTTGTCTCGTGAGGCTACACAACAGTGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGTACTACTTCATGAGGCTCAAGAGCGGCATTTCCAGCAGCTTGAGTGTCGTATCAAAGAGTGTCGTGCTGATGCATATTACCGGATAAAAAAGTTTTGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGTGCGGAGGCATACCAGCTTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAATGTATCAAGAAGCTTCGTGCAGATGCAGAGCAACGTATATCCAAGTTTCGCGCGGAGTTTCGCGTGGAGACTGAGCAGCGCACCAAGGAGTGTCGTGCGGAGACTAAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCAGCGTATCAACGAGTTTCGCGCGGATCCAGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTATAAGTGGCTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACGGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAATGCGTTTGTCTCGTGAGGCTACAGAACAACGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGCACTACTTCAGGAGGCTCAAGAGCGGCGTTTCCAGCAGCTTGAGTGTCGTATCAAAGAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGCCCAGCGTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAGCGTATCAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCAACGAGTTTCGCGCGGAGTGTCGTGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTAAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCAGCGTATCAACGAGTTTCGCGCGTTTTGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCGGAGGCATACCAGCTTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAATGTATCAAGAAGCTTCGTGCAGATGCAGAGCAGCGTATCAACGAGTTTCGCACGGAGTGTCACGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAATGAGTGTCGTGTAGAGTATGGATCCTGTGAAGGAGGAACAATGAGATCAGCGACTGCACCGAATCCATCATGTTCGTCGGGGAACCGTTTCAATGACGATGCCTGTGATTTTGAATATTACCGGATCAAAAAGTTTTGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCAATGAGGCAGCCCAGCGTATCAGGGAGTGTCGCCCAAAGTATCGTGCGGATGCAGAACAGCGTATAAAGAAGCTTCGTGCAGATGCAGAACAACGTATAAAGAAGCTTCGTGCGGATGCAGTGCAGCGTATCAACGCGTTTCGCGTGGAATGTCGCGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCAACAACGTATCAGGAGTGTCGCGCGGAGGCATACAGCTTATCAGGGAGTGTCGCGCAGAGTATGTGCGGCTGCAGACAATGATCAAGAAGCTTCGTGCAGATGCAGAGCAGCGTATCACGAGTTTCGGACGGAGTGTCACGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAATGAGTGTCGTGTGATGTATGTGTGGCTGCAGGGTAGCGTATCAAAGAGTGTCGAGAGGAGGCAGAGCAGGATCTGTGTCACACTGTTAGTCATTTATTATGTTGCCATGTCTTATAAGTGGCTACATCAGTCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGCGTTGTTGGGGAGAGAATAGTTCCTCTTATATG 4751 0.5058 MLECRIKECRADADYRIKKFRAEAEQRIKECRAEAAQRIRKCRAEYRADAEQRIKKLRADAEQRINVFRVECRVETEQRIKECRVETEQRIKECRVEYGAAAGQRINEFRADPVITLCGHLFCWPCLHKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGRSVIDPRTKIPPRPSDIHTLFGSLEQMCLSREATQQCFKEYIDQCIEEFCVAQEQRIALLHEAQERHFQQLECRIKECRADAYYRIKKFCAEAEQRIKECRAEAYQLIRECRAEYRADAEQCIKKLRADAEQRISKFRAEFRVETEQRTKECRAETKQRIKECRVEYGAAAGQRIKECREEAEQRINEFRADPVITLCGHLFCWPCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGRSVTDPRTEIPPRPSDIHTLFASLEQMRLSREATEQRFKEYIDQCIEEFCVAQEQRIALLQEAQERRFQQLECRIKECRADADYRIKKFRAEAEQRIKECRAEADQRIRECRAEYRADAEQRIKKLRADAEQRINEFRAECRVETEQRIKECRAETKQRIKECRVEYGAAAGQRIKECREEAEQRINEFRADPVITLCGHLFCWPCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGRSVTDPRTEIPPRPSDIHTLFASLEQMRLSREATEQRFKEYIDQCIEEFCVAQEQRYRIKKFRAEAEQRIKECRAEAAQRIRECRPEYRADAEQRIKKLRADAEQPHQGVSCRVWCSCRAAYQRVSRGLGGTMRSATAPNPSCSSGNRFNDDACDFECVVGEEKLVPLYGKGRSVTDPRTKIPPLPSDIHTLFGSLEQMRLSREATQQCFKEYIDQCIEEFCVAQEQRIVLLHEAQERHFQQLECRIKECRADAYYRIKKFCAEAEQRIKECRAEAYQLIRECRAEYRADAEQCIKKLRADAEQRISKFRAEFRVETEQRTKECRAETKQRIKECRVEYGAAAGQRIKECREEAEQRINEFRADPVITLCGHLFCWPCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGRSVTDPRTEIPPRPSDIHTLFASLEQMRLSREATEQRFKEYIDQCIEEFCVAQEQRIALLQEAQERRFQQLECRIKECRADADYRIKKFRAEAEQRIKECRAEAAQRIRECRAEYRADAEQRIKKLRADAEQRINEFRAECRVETEQRIKECRAETKQRIKECRVEYGAAAGQRIKECREEAEQRINEFRAFCAEAEQRIKECRAEAYQLIRECRAEYRADAEQCIKKLRADAEQRINEFRTECHVETEQRIKECRAETEQRINECRVEYGSCEGGTMRSATAPNPSCSSGNRFNDDACDFEYYRIKKFCAEAEQRIKECRNEAAQRIRECRPKYRADAEQRIKKLRADAEQRIKKLRADAVQRINAFRVECRVETEQRIKECRVETEQRIKECRVEYGAAAGQQQRIRSVARRHTAYQGVSRRVCAAADNDQEASCRCRAAYHEFRTECHVETEQRIKECRAETEQRINECRVMYVWLQGSVSKSVERRQSRICVTLLVIYYVAMSYKWLHQSFSSSRMSRLQSVVGERIVPLI 1583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3680 1583 Coils Coil 21 41 - -
Psa2g3680 1583 PANTHER RING ZINC FINGER PROTEIN-RELATED 795 822 - -
Psa2g3680 1583 PANTHER RING ZINC FINGER PROTEIN-RELATED 586 652 - -
Psa2g3680 1583 PANTHER RING ZINC FINGER PROTEIN-RELATED 108 173 - -
Psa2g3680 1583 PANTHER RING ZINC FINGER PROTEIN-RELATED 997 1063 - -
Psa2g3680 1583 PANTHER RING ZINC FINGER PROTEIN-RELATED 347 413 - -
Psa2g3680 1583 SUPERFAMILY Apolipoprotein A-I 197 349 - -
Psa2g3680 1583 Coils Coil 870 890 - -
Psa2g3680 1583 Coils Coil 1227 1261 - -
Psa2g3680 1583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1000 1044 IPR013083 -
Psa2g3680 1583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 155 IPR013083 -
Psa2g3680 1583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 394 IPR013083 -
Psa2g3680 1583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 589 633 IPR013083 -
Psa2g3680 1583 ProSiteProfiles Zinc finger RING-type profile. 576 622 IPR001841 -
Psa2g3680 1583 Coils Coil 899 919 - -
Psa2g3680 1583 Coils Coil 700 720 - -
Psa2g3680 1583 Coils Coil 1358 1378 - -
Psa2g3680 1583 Coils Coil 1109 1129 - -
Psa2g3680 1583 Coils Coil 220 240 - -
Psa2g3680 1583 SUPERFAMILY RING/U-box 998 1045 - -
Psa2g3680 1583 Coils Coil 1278 1298 - -
Psa2g3680 1583 SUPERFAMILY RING/U-box 109 156 - -
Psa2g3680 1583 SUPERFAMILY RING/U-box 348 395 - -
Psa2g3680 1583 Coils Coil 249 269 - -
Psa2g3680 1583 Coils Coil 1072 1092 - -
Psa2g3680 1583 Coils Coil 459 479 - -
Psa2g3680 1583 ProSiteProfiles Zinc finger RING-type profile. 94 144 IPR001841 -
Psa2g3680 1583 Coils Coil 514 545 - -
Psa2g3680 1583 ProSiteProfiles Zinc finger RING-type profile. 987 1033 IPR001841 -
Psa2g3680 1583 Coils Coil 661 681 - -
Psa2g3680 1583 SMART ring_2 576 621 IPR001841 -
Psa2g3680 1583 SMART ring_2 987 1032 IPR001841 -
Psa2g3680 1583 SMART ring_2 337 382 IPR001841 -
Psa2g3680 1583 SMART ring_2 94 143 IPR001841 -
Psa2g3680 1583 Coils Coil 488 508 - -
Psa2g3680 1583 Coils Coil 422 442 - -
Psa2g3680 1583 Coils Coil 1164 1195 - -
Psa2g3680 1583 ProSitePatterns Zinc finger RING-type signature. 596 605 IPR017907 -
Psa2g3680 1583 Coils Coil 1138 1158 - -
Psa2g3680 1583 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 586 652 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3680 1583 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 997 1063 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3680 1583 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 347 413 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3680 1583 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 173 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3680 1583 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 795 822 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3680 1583 SUPERFAMILY RING/U-box 587 634 - -
Psa2g3680 1583 ProSiteProfiles Zinc finger RING-type profile. 337 383 IPR001841 -
Psa2g3680 1583 Coils Coil 47 67 - -
Psa2g3680 1583 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Psa2g3680 1583 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Psa2g3680 1583 SUPERFAMILY Apolipoprotein A-I 1084 1256 - -
Psa2g3680 1583 Pfam Zinc finger, C3HC4 type (RING finger) 987 1032 IPR018957 GO:0046872
Psa2g3680 1583 Pfam Zinc finger, C3HC4 type (RING finger) 111 143 IPR018957 GO:0046872
Psa2g3680 1583 Pfam Zinc finger, C3HC4 type (RING finger) 337 382 IPR018957 GO:0046872
Psa2g3680 1583 Pfam Zinc finger, C3HC4 type (RING finger) 576 621 IPR018957 GO:0046872
Psa2g3680 1583 ProSitePatterns Zinc finger RING-type signature. 1007 1016 IPR017907 -
Psa2g3680 1583 Coils Coil 1384 1408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3680 Psa-Chr2 394898725 394906273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3680 586 652 C3H Transcription Factor Family AT2G23780 64.384 3.88e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3680 K10666 - gmu:124857383 134.42