Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3678 ATGAGATCAGCGACTGCACCGAATCCATCATGTTCATCGGGGAACCGTTTCAATGACGATGCCTGTGATTTTGAATGTAACATTTGTTTCGATTTGTCTCAGGATCCAGTGATCACACTTTGTGGTCATTTATTCTGTTGGTCATGTCTTTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCTGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACTGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGAGGCTACAGAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGCACTACTTCAGGAGGCTCAAGAGCGGCGTTTCCAGCAGCTTGAGTGTCGTATCAAAGAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGCCCAGCGTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAGCGTATAAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCAACGAGTTTCGCGCGGAGTGTCGTGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTAAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCGGCGTATCAACGAGTTTCACGCAATTTGGGAGGAACGATGA 837 0.4934 MRSATAPNPSCSSGNRFNDDACDFECNICFDLSQDPVITLCGHLFCWSCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGRSVTDPRTEIPPRPSDIHTLFASLEQTRLSREATEQRFKEYIDQCIEEFCVAQEQRIALLQEAQERRFQQLECRIKECRADADYRIKKFRAEAEQRIKECRAEAAQRIRECRAEYRADAEQRIKKLRADAEQRINEFRAECRVETEQRIKECRAETKQRIKECRVEYGAAAGQRIKECREEAERRINEFHAIWEER* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3678 278 SUPERFAMILY RING/U-box 23 79 - -
Psa2g3678 278 SUPERFAMILY Apolipoprotein A-I 118 272 - -
Psa2g3678 278 CDD RING-HC_AtRMA_like 24 68 - -
Psa2g3678 278 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Psa2g3678 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 97 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3678 278 Pfam Zinc finger, C3HC4 type (RING finger) 25 66 - -
Psa2g3678 278 Coils Coil 143 163 - -
Psa2g3678 278 Coils Coil 198 229 - -
Psa2g3678 278 SMART ring_2 26 66 IPR001841 -
Psa2g3678 278 Coils Coil 172 192 - -
Psa2g3678 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Psa2g3678 278 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 97 - -
Psa2g3678 278 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3678 Psa-Chr2 394818759 394819595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3678 15 98 C3H Transcription Factor Family AT2G23780 64.444 2.32e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3678 K10666 - gmx:100814783 157.147