Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3677 GATCCAGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCGTTCTAATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACTGAGATTCCTCCTCGTCCTTCCTACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGTGTTTGTCTCGTGAGGCTTCAGAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTATTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTTTCCCGTAGAGGCAGCCCAGCGTATCAGGGAGTGTCGCGCAGAGTATCGTGTGGATGCAGAACAACGTATAAAGAAGCTTCGTGCGGATGCAAAGCAGTGTATCAACGAGTTTCCGCGGAGTGTCGTGGCAGGGTATCAAGGAGTGCCGAGAGGAGGCAGAGCGGTGTATCAACGAGTTTCACGCAATTTGGGAGGAACGATAAGATCAGCGACTGCACTGAATCCATCATGTTCATCGGGGAACCGTTTCAATGACGATGCCTGTGAATTTGAATGTAACATTTGTTTCGATTTGGCTCAGGATCCAGTGATCACAGTTTGTGGTCATTTATTCTTTTGTCCATGTCTTTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAGTTGGTTCCTCTTTATGGTAAAGGAGGATCGGTAACTGATCCCAGAACAGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCGAAAGCGTTTGTCTCGTGAGGCTACACAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAACGTATTGCACTACTTCAGGAGGCTCAAGAGAGGCGTTTCCAGCAGCTTGGGTGTCGTATCAAAGAGTGTCGTGCTGATGCAGATTATCGGATCAAAAAGTTTTGTGCAGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGACCAGCTTATCAGGGAGTGTCGCGCAGAGTATCGTGCAGATGCAGAACAATGTATCAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCACCGAGTTTCACGCGAGGTGTCGCGTGGAGGTTGAGCAGCGCACCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCGGGGCAGCCTATCTTGGATTGCCGAGATGAGGAAGAGCAGCGTATCAACGAGTTTCGCGCGGATCCAATGATCACACTTTGTGGTCATTTATTCTGGTGTTCATGTCTTTATAAGTGGTTACATCATCGCTCTCGTCCTCAAGAATTTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTGTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACGGAGATTCCTCCTCGTCCTTCTGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGTGGCTACAAAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTATGACAAGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGACCAGCCTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAGCGTATCAAGAAGCTTCGTGTGGATGCAGAGCAGCGTATCAACGAGTTTTGCGCGGAGTGTCTTTTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGATCCAGCATCACACTTTGTTGGTCATTTATCTTTTGGCCATGTCTTTATAAGTGGCACATCATTGTTCCATCTCTCAGAATGTCCCGTTTCAAGGCTTTGTTGGGGAAGAGAAGTTGGTTCCTGCTTTATGAGCAGCTATCGCACTACTTCAGAGGCTCAAGAGCGGCGTTCCAGCAGCATTGTGTGTCGTATTCAACAGAGTGTCGTGCTGATGTAGATTACAGGATTCAAAAAGTTTCGTACGGAGGCAGAACAACGATCAAAGATGTACGCAGAGGCAGACCAGCAGGCAGCGTATCTAACGAGTTTCGCGCGGAGTGTCTTTGGAACTTAGCAGCGCATCAAGGGTGTGTGCGAGACGAGCAGAGCGATCACAGGAGGTCTGTAGTAGTAGGTGCGGCTGGCAGGGCAGCGTATCAAGGAGTGGCCGAGAGGAGGCAGAGCGGCGTATCACGACGTATCGCATACTTCAGGAGGCCAAAGAGCGGCGTTTCCAGCACTTTGATGTCGTATCAGAAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAGTTTCGTGCGGAAGAAACAACCGTATCAGAAGCTTCGTGGGATGCAGCAGGCAGTGTATCAACGAGTTTCGGCGGGAGTGTCGCTGTGGAACTAGAAAAAAACAGCGCATCAGAGGAGTGCGTGCATGTGAGACTGACAGCCGTCATCCAGAGTGGTCGTTGTAGAGTATGGTGGCGGCTGCAGGGCGCCGTATCTAGGATTGCCCGAGAGAGGAAGAGCAGCGACTCCAGTGAATCACACTTGTGGTCATTTATTCTGTTGCATGTCTTTATAAGTTTACATCATCTTCTCATCCTCAAGAATTCCCGTTTCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATTTGGTAAAGGAATTCGGTAAACGATCCAAGAACGTGAGATTCCTCTGGTCCTTTCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCAGTGAGGCTACGAAACAAGCGTTTCAAGGAGTATAGTAGATCAGTGTATTGGAGGAATTTGGGTGTGGCTCAAGGAGCAGGGGGGGCAATTGAATCGGCAAAACTACTTCAGAAGGCTCAAGAGCGGCGTTTCCGCACGCTTAGAGTGTCGTATCAAAGAGTGTCGTTGTCGAGTAGCATGATCCGAGTTGAATCACACTTGTGGTCATTTATTCTTTGTGGCCATGTCTTTATAAGCGGTACATCATCCGTCTCATCCTCAAGTAATGTCCTTTTGCAAAGGCTTGTTGGGGAAGAGGATATTAGGTTCCTCTTTATGCGAATGCGTTTGTCTCGGAGGCTAAAGACAGACGTTCTCAAGGCAGTATATAGATCAGGTGTATTAGCATTTTGTGTGGCTCAAGAGCAAGCAACAACGTATCAAGGAGTGTCGGTCGCAGAGGCAGACCAGCTTATCAGGGAGTGTCGCGAGAGTATCGTGCGGATGCAGAACAATGCGTATCAGAAGCTTCGTGGATGCAGCAGCGTGTATCACACGAGTTTCCGCGGCGCAGGTTCGCAGGAGACTTGCAGCGCTATCAAGGAGCCGTGTTTGGGAAGACTAGAGCAGCGGATCAAGGACTGTGTGTGTAGAATGGTGCGGCCTAGCAGGGACAGACAGGGTATCAAGGAGTGCGAGAGGAAGGCAGAGCGCGTATCAAACGAGTTTCACGCGGTTTGGATGGAACAATTGAGATCAGCGACTGCACCGAATCGCATCATCAGCGTATCGGCACGACTTCAGGAGCTTAAGGCTGCGTTCCAGCACTTGAGTGTTCGTATCAAAGTGTTCGTGTTGAAGCGATTTCGCGGATCAAAAAGTTCTGCGGAGCAGAACAAGTATCAAGGAGTGTGCGCAAGAGCAGCCCAGCCCTCAGGATCCAGTGATCAACACTTTGTGGTCATTTATTCTGTGGCCATGCTTTATAAGCTGGTTAACATCATTCGTTCTACATACGAGATGTCCTGTTTGCCCAAGCGTTGTGGGGAAGAGAAATTGGTTCCTCTTTATGGTATCGCACTACTCAGGAGGCTCAAGAGTCGTCTTTCCAGCACTTTGATTCGTATCAAAGATGTCTGTGCTGATCAGATTACCGAGGATCAAAAAGTTTCGTGCGAGGCAGAACAAACAACAGCGTATCAAGANGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGAGGCTACACAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGCACTACTTCAGGAGGCTCAAGAGCGGCGTTTCCAGCAGCTTGTGTGTCGTATCAAAGAGTGTCGTGCTGATGTAGATTACAGGATCAAAAAGTTTCGTACGGAGGCAGAACAACGTATCAAGGAGTGTCACGCAGAGGCAGACCAGCGTATCAGGGAGTGTCGCGCAGAGTATCGTGGGGATGCAAAACAGCGTATAAAGAAGCTTCGTGTGGATGCAGAGCAGCGTATCAACGAGTTTCGCGCGGAGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCGGCGTATCAACGAGTTTCGAGCAATTTGGGAGGAACGATGAGATTAGCGACTGCACCGAATCCATCATGTTCGTCGGGGAACCGTTTCAATGACGATGCCTATGATTTTGAATGTAACATTTGTTTCGATTTGGCTCAGGATCCAGTGATCACAGAAACACCAGTAAATAAGAAAACCGGTACAGAAATATTCACCGAACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGTTAAAGGAAGATCGGTAACTGATCCCAGAACTGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGAGGCTACAGAACAGCATTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGCACTACTTCAGGAGGCTAAAGAGCGGCGTTTCCAGCAGCTCGAGTGTCGTATCAAAAAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAATTTCGTGCGGAAGCAAAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGACCAGCGTATCAGGGAGTGTCGTACAGAGTATCGTGCGGATGCAGAACAGCGTATCAAGAAGCTTCGTGCGGATGCAAAGCAGTGTATCAACGAGTTTCGCGTAGAGTGTCGCGTGGAGACTGAGCAGCGCATCAAGGAGTGCCATGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCAGCGTATCAACGAGTTTCGCGCGGATCCTATAATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTACAAAGGCGTTGTTGAGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACTGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGAGGCTACAAAACAAGCGTTTCAAGAGTATAGTAGATCAGTGTATTGGGGAATTTGTGTGTGGCTCAAGGCAGCACAAATTCGCACTACTTCAGAAGGATCAAGAGCGGCGTTTCGCAACAGCTTGAGTGTCGTATCAAAGTGTCCGTGTCGAAGCATGATAACCGGATCAAAAAGTTTCATCGCGGAGGCAGAACAACCATAA 5847 0.4838 DPVITLCGHLFCWPCLYKWLHHRSNPQECPVCKGVVGEEKLVPLYGKGRSVTDPRTEIPPRPSYIHTLFASLEQTCLSREASEQRFKEYIDQCIEEFYYRIKKFRAEAEQRIKEFPVEAAQRIRECRAEYRVDAEQRIKKLRADAKQCINEFPRSVVAGYQGVPRGGRAVYQRVSRNLGGTIRSATALNPSCSSGNRFNDDACEFECNICFDLAQDPVITVCGHLFFCPCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGGSVTDPRTEIPPRPSDIHTLFASLERKRLSREATQQRFKEYIDQCIEEFCVAQEQRIALLQEAQERRFQQLGCRIKECRADADYRIKKFCAEAEQRIKECRAEADQLIRECRAEYRADAEQCIKKLRADAEQRITEFHARCRVEVEQRTKECRAETEQRIKECRVEYGAAAGQPILDCRDEEEQRINEFRADPMITLCGHLFWCSCLYKWLHHRSRPQEFPVCKGVVGEEKLVPVYGKGRSVTDPRTEIPPRPSDIHTLFASLEQTRLSRVATKQRFKEYIDQCIEEFYDKIKKFRAEAEQRIKECRAEADQPIRECRAEYRADAEQRIKKLRVDAEQRINEFCAECLLETEQRIKECRAETEQRIKECRVEYGAAAGQRSSITLCWSFIFWPCLYKWHIIVPSLRMSRFKALLGKRSWFLLYEQLSHYFRGSRAAFQQHCVSYSTECRADVDYRIQKVSYGGRTTIKDVRRGRPAGSVSNEFRAECLWNLAAHQGCVRDEQSDHRRSVVVGAAGRAAYQGVAERRQSGVSRRIAYFRRPKSGVSSTLMSYQKCRADADYRIKKFRAEETTVSEASWDAAGSVSTSFGGSVAVELEKNSASEECVHVRLTAVIQSGRCRVWWRLQGAVSRIARERKSSDSSESHLWSFILLHVFISLHHLLILKNSRFKGVVGEEKLVPLYLVKEFGKRSKNVRFLWSFRHSYVVCELRANAFVSVRLRNKRFKEYSRSVYWRNLGVAQGAGGAIESAKLLQKAQERRFRTLRVSYQRVSLSSSMIRVESHLWSFILCGHVFISGTSSVSSSSNVLLQRLVGEEDIRFLFMRMRLSRRLKTDVLKAVYRSGVLAFCVAQEQATTYQGVSVAEADQLIRECRESIVRMQNNAYQKLRGCSSVYHTSFRGAGSQETCSAIKEPCLGRLEQRIKDCVCRMVRPSRDRQGIKECERKAERVSNEFHAVWMEQLRSATAPNRIISVSARLQELKAAFQHLSVRIKVFVLKRFRGSKSSAEQNKYQGVCARAAQPSGSSDQHFVVIYSVAMLYKLVNIIRSTYEMSCLPKRCGEEKLVPLYGIALLRRLKSRLSSTLIRIKDVCADQITEDQKVSCEAEQTTAYQXEIPPRPSDIHTLFASLEQTRLSREATQQRFKEYIDQCIEEFCVAQEQRIALLQEAQERRFQQLVCRIKECRADVDYRIKKFRTEAEQRIKECHAEADQRIRECRAEYRGDAKQRIKKLRVDAEQRINEFRAEAAYQGVPRGGRAAYQRVSSNLGGTMRLATAPNPSCSSGNRFNDDAYDFECNICFDLAQDPVITETPVNKKTGTEIFTEHHRSHPQECPVCKGVVGEEKLVPLYVKGRSVTDPRTEIPPRPSDIHTLFASLEQTRLSREATEQHFKEYIDQCIEEFCVAQEQRIALLQEAKERRFQQLECRIKKCRADADYRIKKFRAEAKQRIKECRAEADQRIRECRTEYRADAEQRIKKLRADAKQCINEFRVECRVETEQRIKECHVETEQRIKECRVEYGAAAGQRIKECREEAEQRINEFRADPIITLCGHLFCWPCLYKWLHHRSHPQECPVYKGVVEEEKLVPLYGKGRSVTDPRTEIPPRPSDIHTLFASLEQTRLSREATKQAFQEYSRSVYWGICVWLKAAQIRTTSEGSRAAFRNSLSVVSKCPCRSMITGSKSFIAEAEQP* 1949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3677 1948 Coils Coil 1485 1505 - -
Psa2g3677 1948 Coils Coil 1123 1143 - -
Psa2g3677 1948 SMART ring_2 207 247 IPR001841 -
Psa2g3677 1948 SMART ring_2 2 32 IPR001841 -
Psa2g3677 1948 SMART ring_2 1789 1834 IPR001841 -
Psa2g3677 1948 SUPERFAMILY RING/U-box 1800 1847 - -
Psa2g3677 1948 Coils Coil 1727 1747 - -
Psa2g3677 1948 Coils Coil 585 605 - -
Psa2g3677 1948 ProSiteProfiles Zinc finger RING-type profile. 1789 1835 IPR001841 -
Psa2g3677 1948 Coils Coil 353 373 - -
Psa2g3677 1948 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 451 517 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3677 1948 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 1533 1628 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3677 1948 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 1 62 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3677 1948 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 1799 1867 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3677 1948 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 182 278 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3677 1948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1802 1846 IPR013083 -
Psa2g3677 1948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 498 IPR013083 -
Psa2g3677 1948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 44 IPR013083 -
Psa2g3677 1948 ProSitePatterns Zinc finger RING-type signature. 7 16 IPR017907 -
Psa2g3677 1948 Pfam RING-type zinc-finger 1800 1831 IPR027370 -
Psa2g3677 1948 ProSiteProfiles Zinc finger RING-type profile. 7 33 IPR001841 -
Psa2g3677 1948 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Psa2g3677 1948 SUPERFAMILY RING/U-box 204 260 - -
Psa2g3677 1948 SUPERFAMILY RING/U-box 1 45 - -
Psa2g3677 1948 Coils Coil 552 572 - -
Psa2g3677 1948 CDD RING-HC_AtRMA_like 205 249 - -
Psa2g3677 1948 Coils Coil 131 151 - -
Psa2g3677 1948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 262 IPR013083 -
Psa2g3677 1948 Coils Coil 1672 1692 - -
Psa2g3677 1948 SUPERFAMILY RING/U-box 1552 1609 - -
Psa2g3677 1948 Pfam Zinc finger, C3HC4 type (RING finger) 207 247 IPR018957 GO:0046872
Psa2g3677 1948 Pfam Zinc finger, C3HC4 type (RING finger) 3 32 IPR018957 GO:0046872
Psa2g3677 1948 Coils Coil 1701 1721 - -
Psa2g3677 1948 PANTHER RING ZINC FINGER PROTEIN-RELATED 451 517 - -
Psa2g3677 1948 PANTHER RING ZINC FINGER PROTEIN-RELATED 1533 1628 - -
Psa2g3677 1948 PANTHER RING ZINC FINGER PROTEIN-RELATED 182 278 - -
Psa2g3677 1948 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 62 - -
Psa2g3677 1948 PANTHER RING ZINC FINGER PROTEIN-RELATED 1799 1867 - -
Psa2g3677 1948 SUPERFAMILY RING/U-box 452 499 - -
Psa2g3677 1948 ProSitePatterns Zinc finger RING-type signature. 1809 1818 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3677 Psa-Chr2 394806361 394815536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3677 1 63 C3H Transcription Factor Family AT2G23780 65.217 1.40e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3677 K10666 - gmx:100814783 144.436