Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa2g3677 | GATCCAGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCGTTCTAATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACTGAGATTCCTCCTCGTCCTTCCTACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGTGTTTGTCTCGTGAGGCTTCAGAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTATTACCGGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTTTCCCGTAGAGGCAGCCCAGCGTATCAGGGAGTGTCGCGCAGAGTATCGTGTGGATGCAGAACAACGTATAAAGAAGCTTCGTGCGGATGCAAAGCAGTGTATCAACGAGTTTCCGCGGAGTGTCGTGGCAGGGTATCAAGGAGTGCCGAGAGGAGGCAGAGCGGTGTATCAACGAGTTTCACGCAATTTGGGAGGAACGATAAGATCAGCGACTGCACTGAATCCATCATGTTCATCGGGGAACCGTTTCAATGACGATGCCTGTGAATTTGAATGTAACATTTGTTTCGATTTGGCTCAGGATCCAGTGATCACAGTTTGTGGTCATTTATTCTTTTGTCCATGTCTTTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAGTTGGTTCCTCTTTATGGTAAAGGAGGATCGGTAACTGATCCCAGAACAGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCGAAAGCGTTTGTCTCGTGAGGCTACACAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAACGTATTGCACTACTTCAGGAGGCTCAAGAGAGGCGTTTCCAGCAGCTTGGGTGTCGTATCAAAGAGTGTCGTGCTGATGCAGATTATCGGATCAAAAAGTTTTGTGCAGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGACCAGCTTATCAGGGAGTGTCGCGCAGAGTATCGTGCAGATGCAGAACAATGTATCAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCACCGAGTTTCACGCGAGGTGTCGCGTGGAGGTTGAGCAGCGCACCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCGGGGCAGCCTATCTTGGATTGCCGAGATGAGGAAGAGCAGCGTATCAACGAGTTTCGCGCGGATCCAATGATCACACTTTGTGGTCATTTATTCTGGTGTTCATGTCTTTATAAGTGGTTACATCATCGCTCTCGTCCTCAAGAATTTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTGTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACGGAGATTCCTCCTCGTCCTTCTGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGTGGCTACAAAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTATGACAAGATCAAAAAGTTTCGTGCGGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGACCAGCCTATCAGGGAGTGTCGCGCAGAGTATCGTGCGGATGCAGAACAGCGTATCAAGAAGCTTCGTGTGGATGCAGAGCAGCGTATCAACGAGTTTTGCGCGGAGTGTCTTTTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGATCCAGCATCACACTTTGTTGGTCATTTATCTTTTGGCCATGTCTTTATAAGTGGCACATCATTGTTCCATCTCTCAGAATGTCCCGTTTCAAGGCTTTGTTGGGGAAGAGAAGTTGGTTCCTGCTTTATGAGCAGCTATCGCACTACTTCAGAGGCTCAAGAGCGGCGTTCCAGCAGCATTGTGTGTCGTATTCAACAGAGTGTCGTGCTGATGTAGATTACAGGATTCAAAAAGTTTCGTACGGAGGCAGAACAACGATCAAAGATGTACGCAGAGGCAGACCAGCAGGCAGCGTATCTAACGAGTTTCGCGCGGAGTGTCTTTGGAACTTAGCAGCGCATCAAGGGTGTGTGCGAGACGAGCAGAGCGATCACAGGAGGTCTGTAGTAGTAGGTGCGGCTGGCAGGGCAGCGTATCAAGGAGTGGCCGAGAGGAGGCAGAGCGGCGTATCACGACGTATCGCATACTTCAGGAGGCCAAAGAGCGGCGTTTCCAGCACTTTGATGTCGTATCAGAAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAGTTTCGTGCGGAAGAAACAACCGTATCAGAAGCTTCGTGGGATGCAGCAGGCAGTGTATCAACGAGTTTCGGCGGGAGTGTCGCTGTGGAACTAGAAAAAAACAGCGCATCAGAGGAGTGCGTGCATGTGAGACTGACAGCCGTCATCCAGAGTGGTCGTTGTAGAGTATGGTGGCGGCTGCAGGGCGCCGTATCTAGGATTGCCCGAGAGAGGAAGAGCAGCGACTCCAGTGAATCACACTTGTGGTCATTTATTCTGTTGCATGTCTTTATAAGTTTACATCATCTTCTCATCCTCAAGAATTCCCGTTTCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATTTGGTAAAGGAATTCGGTAAACGATCCAAGAACGTGAGATTCCTCTGGTCCTTTCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCAGTGAGGCTACGAAACAAGCGTTTCAAGGAGTATAGTAGATCAGTGTATTGGAGGAATTTGGGTGTGGCTCAAGGAGCAGGGGGGGCAATTGAATCGGCAAAACTACTTCAGAAGGCTCAAGAGCGGCGTTTCCGCACGCTTAGAGTGTCGTATCAAAGAGTGTCGTTGTCGAGTAGCATGATCCGAGTTGAATCACACTTGTGGTCATTTATTCTTTGTGGCCATGTCTTTATAAGCGGTACATCATCCGTCTCATCCTCAAGTAATGTCCTTTTGCAAAGGCTTGTTGGGGAAGAGGATATTAGGTTCCTCTTTATGCGAATGCGTTTGTCTCGGAGGCTAAAGACAGACGTTCTCAAGGCAGTATATAGATCAGGTGTATTAGCATTTTGTGTGGCTCAAGAGCAAGCAACAACGTATCAAGGAGTGTCGGTCGCAGAGGCAGACCAGCTTATCAGGGAGTGTCGCGAGAGTATCGTGCGGATGCAGAACAATGCGTATCAGAAGCTTCGTGGATGCAGCAGCGTGTATCACACGAGTTTCCGCGGCGCAGGTTCGCAGGAGACTTGCAGCGCTATCAAGGAGCCGTGTTTGGGAAGACTAGAGCAGCGGATCAAGGACTGTGTGTGTAGAATGGTGCGGCCTAGCAGGGACAGACAGGGTATCAAGGAGTGCGAGAGGAAGGCAGAGCGCGTATCAAACGAGTTTCACGCGGTTTGGATGGAACAATTGAGATCAGCGACTGCACCGAATCGCATCATCAGCGTATCGGCACGACTTCAGGAGCTTAAGGCTGCGTTCCAGCACTTGAGTGTTCGTATCAAAGTGTTCGTGTTGAAGCGATTTCGCGGATCAAAAAGTTCTGCGGAGCAGAACAAGTATCAAGGAGTGTGCGCAAGAGCAGCCCAGCCCTCAGGATCCAGTGATCAACACTTTGTGGTCATTTATTCTGTGGCCATGCTTTATAAGCTGGTTAACATCATTCGTTCTACATACGAGATGTCCTGTTTGCCCAAGCGTTGTGGGGAAGAGAAATTGGTTCCTCTTTATGGTATCGCACTACTCAGGAGGCTCAAGAGTCGTCTTTCCAGCACTTTGATTCGTATCAAAGATGTCTGTGCTGATCAGATTACCGAGGATCAAAAAGTTTCGTGCGAGGCAGAACAAACAACAGCGTATCAAGANGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGAGGCTACACAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGCACTACTTCAGGAGGCTCAAGAGCGGCGTTTCCAGCAGCTTGTGTGTCGTATCAAAGAGTGTCGTGCTGATGTAGATTACAGGATCAAAAAGTTTCGTACGGAGGCAGAACAACGTATCAAGGAGTGTCACGCAGAGGCAGACCAGCGTATCAGGGAGTGTCGCGCAGAGTATCGTGGGGATGCAAAACAGCGTATAAAGAAGCTTCGTGTGGATGCAGAGCAGCGTATCAACGAGTTTCGCGCGGAGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCGGCGTATCAACGAGTTTCGAGCAATTTGGGAGGAACGATGAGATTAGCGACTGCACCGAATCCATCATGTTCGTCGGGGAACCGTTTCAATGACGATGCCTATGATTTTGAATGTAACATTTGTTTCGATTTGGCTCAGGATCCAGTGATCACAGAAACACCAGTAAATAAGAAAACCGGTACAGAAATATTCACCGAACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAATTGGTTCCTCTTTATGTTAAAGGAAGATCGGTAACTGATCCCAGAACTGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGAGGCTACAGAACAGCATTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAGCGTATCGCACTACTTCAGGAGGCTAAAGAGCGGCGTTTCCAGCAGCTCGAGTGTCGTATCAAAAAGTGTCGTGCTGATGCAGATTACCGGATCAAAAAATTTCGTGCGGAAGCAAAACAACGTATCAAGGAGTGTCGCGCAGAGGCAGACCAGCGTATCAGGGAGTGTCGTACAGAGTATCGTGCGGATGCAGAACAGCGTATCAAGAAGCTTCGTGCGGATGCAAAGCAGTGTATCAACGAGTTTCGCGTAGAGTGTCGCGTGGAGACTGAGCAGCGCATCAAGGAGTGCCATGTGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATGGTGCGGCTGCAGGGCAGCGTATCAAGGAGTGCCGAGAGGAGGCAGAGCAGCGTATCAACGAGTTTCGCGCGGATCCTATAATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTATAAGTGGTTACATCATCGTTCTCATCCTCAAGAATGTCCCGTTTACAAAGGCGTTGTTGAGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATCCAAGAACTGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCAAACGCGTTTGTCTCGTGAGGCTACAAAACAAGCGTTTCAAGAGTATAGTAGATCAGTGTATTGGGGAATTTGTGTGTGGCTCAAGGCAGCACAAATTCGCACTACTTCAGAAGGATCAAGAGCGGCGTTTCGCAACAGCTTGAGTGTCGTATCAAAGTGTCCGTGTCGAAGCATGATAACCGGATCAAAAAGTTTCATCGCGGAGGCAGAACAACCATAA | 5847 | 0.4838 | DPVITLCGHLFCWPCLYKWLHHRSNPQECPVCKGVVGEEKLVPLYGKGRSVTDPRTEIPPRPSYIHTLFASLEQTCLSREASEQRFKEYIDQCIEEFYYRIKKFRAEAEQRIKEFPVEAAQRIRECRAEYRVDAEQRIKKLRADAKQCINEFPRSVVAGYQGVPRGGRAVYQRVSRNLGGTIRSATALNPSCSSGNRFNDDACEFECNICFDLAQDPVITVCGHLFFCPCLYKWLHHRSHPQECPVCKGVVGEEKLVPLYGKGGSVTDPRTEIPPRPSDIHTLFASLERKRLSREATQQRFKEYIDQCIEEFCVAQEQRIALLQEAQERRFQQLGCRIKECRADADYRIKKFCAEAEQRIKECRAEADQLIRECRAEYRADAEQCIKKLRADAEQRITEFHARCRVEVEQRTKECRAETEQRIKECRVEYGAAAGQPILDCRDEEEQRINEFRADPMITLCGHLFWCSCLYKWLHHRSRPQEFPVCKGVVGEEKLVPVYGKGRSVTDPRTEIPPRPSDIHTLFASLEQTRLSRVATKQRFKEYIDQCIEEFYDKIKKFRAEAEQRIKECRAEADQPIRECRAEYRADAEQRIKKLRVDAEQRINEFCAECLLETEQRIKECRAETEQRIKECRVEYGAAAGQRSSITLCWSFIFWPCLYKWHIIVPSLRMSRFKALLGKRSWFLLYEQLSHYFRGSRAAFQQHCVSYSTECRADVDYRIQKVSYGGRTTIKDVRRGRPAGSVSNEFRAECLWNLAAHQGCVRDEQSDHRRSVVVGAAGRAAYQGVAERRQSGVSRRIAYFRRPKSGVSSTLMSYQKCRADADYRIKKFRAEETTVSEASWDAAGSVSTSFGGSVAVELEKNSASEECVHVRLTAVIQSGRCRVWWRLQGAVSRIARERKSSDSSESHLWSFILLHVFISLHHLLILKNSRFKGVVGEEKLVPLYLVKEFGKRSKNVRFLWSFRHSYVVCELRANAFVSVRLRNKRFKEYSRSVYWRNLGVAQGAGGAIESAKLLQKAQERRFRTLRVSYQRVSLSSSMIRVESHLWSFILCGHVFISGTSSVSSSSNVLLQRLVGEEDIRFLFMRMRLSRRLKTDVLKAVYRSGVLAFCVAQEQATTYQGVSVAEADQLIRECRESIVRMQNNAYQKLRGCSSVYHTSFRGAGSQETCSAIKEPCLGRLEQRIKDCVCRMVRPSRDRQGIKECERKAERVSNEFHAVWMEQLRSATAPNRIISVSARLQELKAAFQHLSVRIKVFVLKRFRGSKSSAEQNKYQGVCARAAQPSGSSDQHFVVIYSVAMLYKLVNIIRSTYEMSCLPKRCGEEKLVPLYGIALLRRLKSRLSSTLIRIKDVCADQITEDQKVSCEAEQTTAYQXEIPPRPSDIHTLFASLEQTRLSREATQQRFKEYIDQCIEEFCVAQEQRIALLQEAQERRFQQLVCRIKECRADVDYRIKKFRTEAEQRIKECHAEADQRIRECRAEYRGDAKQRIKKLRVDAEQRINEFRAEAAYQGVPRGGRAAYQRVSSNLGGTMRLATAPNPSCSSGNRFNDDAYDFECNICFDLAQDPVITETPVNKKTGTEIFTEHHRSHPQECPVCKGVVGEEKLVPLYVKGRSVTDPRTEIPPRPSDIHTLFASLEQTRLSREATEQHFKEYIDQCIEEFCVAQEQRIALLQEAKERRFQQLECRIKKCRADADYRIKKFRAEAKQRIKECRAEADQRIRECRTEYRADAEQRIKKLRADAKQCINEFRVECRVETEQRIKECHVETEQRIKECRVEYGAAAGQRIKECREEAEQRINEFRADPIITLCGHLFCWPCLYKWLHHRSHPQECPVYKGVVEEEKLVPLYGKGRSVTDPRTEIPPRPSDIHTLFASLEQTRLSREATKQAFQEYSRSVYWGICVWLKAAQIRTTSEGSRAAFRNSLSVVSKCPCRSMITGSKSFIAEAEQP* | 1949 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa2g3677 | 1948 | Coils | Coil | 1485 | 1505 | - | - | |
Psa2g3677 | 1948 | Coils | Coil | 1123 | 1143 | - | - | |
Psa2g3677 | 1948 | SMART | ring_2 | 207 | 247 | IPR001841 | - | |
Psa2g3677 | 1948 | SMART | ring_2 | 2 | 32 | IPR001841 | - | |
Psa2g3677 | 1948 | SMART | ring_2 | 1789 | 1834 | IPR001841 | - | |
Psa2g3677 | 1948 | SUPERFAMILY | RING/U-box | 1800 | 1847 | - | - | |
Psa2g3677 | 1948 | Coils | Coil | 1727 | 1747 | - | - | |
Psa2g3677 | 1948 | Coils | Coil | 585 | 605 | - | - | |
Psa2g3677 | 1948 | ProSiteProfiles | Zinc finger RING-type profile. | 1789 | 1835 | IPR001841 | - | |
Psa2g3677 | 1948 | Coils | Coil | 353 | 373 | - | - | |
Psa2g3677 | 1948 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 451 | 517 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Psa2g3677 | 1948 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 1533 | 1628 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Psa2g3677 | 1948 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 1 | 62 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Psa2g3677 | 1948 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 1799 | 1867 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Psa2g3677 | 1948 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 182 | 278 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Psa2g3677 | 1948 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1802 | 1846 | IPR013083 | - | |
Psa2g3677 | 1948 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 454 | 498 | IPR013083 | - | |
Psa2g3677 | 1948 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 44 | IPR013083 | - | |
Psa2g3677 | 1948 | ProSitePatterns | Zinc finger RING-type signature. | 7 | 16 | IPR017907 | - | |
Psa2g3677 | 1948 | Pfam | RING-type zinc-finger | 1800 | 1831 | IPR027370 | - | |
Psa2g3677 | 1948 | ProSiteProfiles | Zinc finger RING-type profile. | 7 | 33 | IPR001841 | - | |
Psa2g3677 | 1948 | ProSiteProfiles | Zinc finger RING-type profile. | 207 | 248 | IPR001841 | - | |
Psa2g3677 | 1948 | SUPERFAMILY | RING/U-box | 204 | 260 | - | - | |
Psa2g3677 | 1948 | SUPERFAMILY | RING/U-box | 1 | 45 | - | - | |
Psa2g3677 | 1948 | Coils | Coil | 552 | 572 | - | - | |
Psa2g3677 | 1948 | CDD | RING-HC_AtRMA_like | 205 | 249 | - | - | |
Psa2g3677 | 1948 | Coils | Coil | 131 | 151 | - | - | |
Psa2g3677 | 1948 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 262 | IPR013083 | - | |
Psa2g3677 | 1948 | Coils | Coil | 1672 | 1692 | - | - | |
Psa2g3677 | 1948 | SUPERFAMILY | RING/U-box | 1552 | 1609 | - | - | |
Psa2g3677 | 1948 | Pfam | Zinc finger, C3HC4 type (RING finger) | 207 | 247 | IPR018957 | GO:0046872 | |
Psa2g3677 | 1948 | Pfam | Zinc finger, C3HC4 type (RING finger) | 3 | 32 | IPR018957 | GO:0046872 | |
Psa2g3677 | 1948 | Coils | Coil | 1701 | 1721 | - | - | |
Psa2g3677 | 1948 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 451 | 517 | - | - | |
Psa2g3677 | 1948 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1533 | 1628 | - | - | |
Psa2g3677 | 1948 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 182 | 278 | - | - | |
Psa2g3677 | 1948 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 62 | - | - | |
Psa2g3677 | 1948 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1799 | 1867 | - | - | |
Psa2g3677 | 1948 | SUPERFAMILY | RING/U-box | 452 | 499 | - | - | |
Psa2g3677 | 1948 | ProSitePatterns | Zinc finger RING-type signature. | 1809 | 1818 | IPR017907 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa2g3677 | Psa-Chr2 | 394806361 | 394815536 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa2g3677 | 1 | 63 | C3H Transcription Factor Family | AT2G23780 | 65.217 | 1.40e-29 | 117 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa2g3677 | K10666 | - | gmx:100814783 | 144.436 |