Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3676 GATCCAGTGATCACACTTTGTGGTCATTTATTCTTTTGGCCATGTCTTTATAAGTGGTTACATCATCATTCTCATCCTCAAGAATGTCCCGTTTGCAAAGGCGTTGTTGGGGAAGAGAAGTTGGTTCCTCTTTATGGTAAAGGAGGATCGGTAACTGATCCCAGAAAGGAGATTCCTCCTCGTCCTTCCGACATTCATACGTTGTTTGCGAGCTTAGAGCGAACGTGTTTGTCTCGTGAAGCTACACAACAGCGTTTCAAGGAGTATATAGATCAGTGTATTGAGGAATTTTGTGTGGCTCAAGAGCAACATTATCGGATCAAAAAGTTTTGTGCAGAGGCAGAACAACGTATCAAGGAGTGTCGCGCAGAGGCAAAACAGCTTATCAGGGAGTGTCGCCCAGAGTATCCTACGGATGCAGAACAATGTATCAAGAAGCTTCGTGCGGATGCAGAGCAGCGTATCACCGAGTTTCACGCGGAGTGTCGCGTGGAGATTGAGCAGCGCACCAAGGAGTGTCGTGCGGAGACTGAGCAGCGCATCAAGGAGTGTCGTGTAGAGTATG 565 0.4743 DPVITLCGHLFFWPCLYKWLHHHSHPQECPVCKGVVGEEKLVPLYGKGGSVTDPRKEIPPRPSDIHTLFASLERTCLSREATQQRFKEYIDQCIEEFCVAQEQHYRIKKFCAEAEQRIKECRAEAKQLIRECRPEYPTDAEQCIKKLRADAEQRITEFHAECRVEIEQRTKECRAETEQRIKECRVEY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3676 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 1 90 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa2g3676 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 44 IPR013083 -
Psa2g3676 188 Coils Coil 111 131 - -
Psa2g3676 188 SUPERFAMILY RING/U-box 1 45 - -
Psa2g3676 188 ProSiteProfiles Zinc finger RING-type profile. 7 33 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3676 Psa-Chr2 394802559 394803204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3676 1 64 C3H Transcription Factor Family AT2G23780 65.714 3.12e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3676 K10666 - gmx:100814783 114.39