Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3667 ATGAACCATTACCAACAAGACCAAATGATGCTCATTTCTCAGCTATTTCCTGCAACTGCGCATGCTTACACTGATACAGCTTCTCAACAAGTGGAGAAGAAGCAAAGACGCAGACGTAACAAGAAGAGTAAAGGTGGAGATAACACTGCAAATGAAATGAACAAGAAAAGGAAACTTAGTGAAAAACAAGTAATTCTGTTGGAAGAACACTTTGGAAGTGAACACAAACTTGAGTCAGAAAGAAAAGACAAACTCGCAATGGAACTTGGTTTGGATCCAAGACAAGTTGCTGTCTGGTTTCAAAACCGTAGAGCTCGTTGGAAGAACAAGAAACTCGAAGAAGAATACACAAATCTCAAAAAGTTCCATGAATCTACCATGCTTGAGAAATGTTTGCTTGAAACCGAGGTATTGAAATTGAGGGAACAACTTTCTGAAGCTGAGAAGGAAATTCAGAGACTTAGAGAGCCTATTGAAGTAGTTCCAACTAACAGTTCAAGTACTTCATCAATCTCTCAGTCAATGGAAGTAATGGAACCACCACCATTTTTTGATGAATTTGAAGCTGATAATGTATATAATGATAATGTGTTTCTTATGCCTTACTTCGATAGCATCGAATGGACATATATCTAG 636 0.3774 MNHYQQDQMMLISQLFPATAHAYTDTASQQVEKKQRRRRNKKSKGGDNTANEMNKKRKLSEKQVILLEEHFGSEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYTNLKKFHESTMLEKCLLETEVLKLREQLSEAEKEIQRLREPIEVVPTNSSSTSSISQSMEVMEPPPFFDEFEADNVYNDNVFLMPYFDSIEWTYI* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3667 211 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Psa2g3667 211 Gene3D - 46 119 - -
Psa2g3667 211 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Psa2g3667 211 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Psa2g3667 211 CDD homeodomain 55 111 IPR001356 GO:0003677
Psa2g3667 211 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Psa2g3667 211 SUPERFAMILY Homeodomain-like 54 117 IPR009057 -
Psa2g3667 211 Pfam Homeodomain 55 109 IPR001356 GO:0003677
Psa2g3667 211 MobiDBLite consensus disorder prediction 44 59 - -
Psa2g3667 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 5 208 - -
Psa2g3667 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 208 IPR045224 GO:0003700
Psa2g3667 211 SMART HOX_1 53 114 IPR001356 GO:0003677
Psa2g3667 211 MobiDBLite consensus disorder prediction 24 59 - -
Psa2g3667 211 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3667 Psa-Chr2 393961046 393962781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3667 9 208 Homeobox Transcription Factor Family AT2G18550 50.476 4.18e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Psa2g3667 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3667 K09338 - gmx:100809616 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3667 2 393961046 393962781 Psa2g3667 2 393961046 393962781 ECH