Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3646 ATGGCGGCTAATAACAAAGTGAAGAACGATGATCCTGCAGTAGAGTCACCAACTTCGGTCCTAGAAGAAGAGGAAATGGAGGTTAAGTTGGAGGAAGAGGTGGTTGCAGATGATGGATCTTCTCTTGTACCGAAATTGATGGTAGAGGAGGAAGAGAAGTTGCTTAAAGCTCTTGCTAAGGAAGAGGAGGAACAGTTTCAGGAGGCGCCAAATCTCAATGACTCGCAGTTTGATAAGTTGGATGAGCTTTTAACGCAAACGAAACTGTACTCGGAGTTTCTTCTGGAGAAAATGGATGACATCACATTGACTGCGGGTGAACAAGAGATTAAGGAAGAGGAAGAGACTCAGTTGGATACTAAACCTAAGGGTCGTGGAAGAAAAAGAAAGGCGGCTAAACAATGCAATACTGGGAAAGCCAAAAAGGCAGTTGAAGCTATGATAACAAGATCTAAAGAAACTGTGAAGACTGAAGATGTGAATTTGAGTGAGGAAGAAAGAACTGAGAAAGAGCAGAGGGAGTTGGTGCCTTTACTAACTGGTGGAAAATTGAAGTCTTATCAACTGAAGGGTGTAAAATGGTTAATCTCCTTGTGGCAAAATGGACTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAGACAATTGGGCTTCTTTCTCATCTTAAATCAAAAGGATTGGATGGGCCATATATGATAATTGCTCCACTATCAACCCTATCCAACTGGATGAATGAGATATCTAGGTTTGCACCATCACTCCCTGCTGTTATCTACCACGGTAATAAAGATGAGAGAAATGAGATCAGAAGGAAACATATGCCTAGCACAATTGGTCCAAAATTTCCCATAGTAATAACTTCTTATGAGATTGCAATGAATGATGCTAAGAAATTTTTCCGGGCATACCAATGGAAATATCTTGTTGTTGATGAGGGTCACAGGCTAAAAAATTCACAATGCAAATTAGTGACCATGTTGAAATTCATCAGAGTTGAAAATAAGCTTCTTTTGACTGGGACACCGCTCCAGAATAACTTAGCAGAGCTGTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCATCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGTGCTTCTGGAGCAACAATGGAAGAAATGGAAGAGAAAAGAAGAAACCAGGTAGTGGCCAAGCTTCATGCAATTCTCAGACCATTTCTTTTGCGCCGAATGAAGTCTGATGTTGAGCTATCATTGCCCCGGAAAAAAGAGATCATTATTTATGCTAACATGACTGAGCATCAGAAGAACTTGCAGGATCATCTAGTTAATGCGACATTCGAGAAACATTTGGACAGGAAACTAACAATTGGGCGTGCTGCGGCGAGTATTAATAACTTGGTAATTCAACTTAGGAAAGTCTGTAACCATCCCGACCTCTTAGAATCACCCTATGATGGTTCATATTTTTATCCTCCTTTGAATGAGATAATTGAGCAATGCGGAAAATTCCAATTGCTCAACCGGTTGTTGGAGCGGCTATTTGCACGTAATCACAAGGTTCTGATCTTCAGTCAATGGACTAAAGTGCTGGATATAATGGATTATTATTTTAGTGAAAAGGGTTTTAAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGATGAAAGGAAACGTCAGATCCAGGAATTCAATGATCTAAACAGCCATTTTAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATAAACCTTACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTGCAGGCCATGGATAGATGTCATAGAATTGGTCAATCAAAGCCTGTTCATGTTTACAGGCTCGCAACTGCACAATCAGTAGAGGGTCGAATGCTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAGGGACAGTTTCATCAGGAGCGTACTACGCATTCCAGTATGGATGAAATGGAGGAAGAGGATATTTTGGCATTGCTTCGAGATGACGAAACAGCTGAGGACAAAATGATACAGAAAGATATTAGTGATGAAGACCTGGAGAATCTCTTGGATCGCAGTGATCTTGTTGTCAATAGCTCAGCTGATGTGAAACCTCCTGTTAGTACCTTTCCCCTTAAAGGACCTGGGTGGGAGGTGGTGATTCCAACTGCATCTGGGGGCATGCTTTCCACTCTCAACAGCTAA 2253 0.4123 MAANNKVKNDDPAVESPTSVLEEEEMEVKLEEEVVADDGSSLVPKLMVEEEEKLLKALAKEEEEQFQEAPNLNDSQFDKLDELLTQTKLYSEFLLEKMDDITLTAGEQEIKEEEETQLDTKPKGRGRKRKAAKQCNTGKAKKAVEAMITRSKETVKTEDVNLSEEERTEKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGLLSHLKSKGLDGPYMIIAPLSTLSNWMNEISRFAPSLPAVIYHGNKDERNEIRRKHMPSTIGPKFPIVITSYEIAMNDAKKFFRAYQWKYLVVDEGHRLKNSQCKLVTMLKFIRVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCASGATMEEMEEKRRNQVVAKLHAILRPFLLRRMKSDVELSLPRKKEIIIYANMTEHQKNLQDHLVNATFEKHLDRKLTIGRAAASINNLVIQLRKVCNHPDLLESPYDGSYFYPPLNEIIEQCGKFQLLNRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGFKVCRIDGSVKLDERKRQIQEFNDLNSHFRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQSKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTTHSSMDEMEEEDILALLRDDETAEDKMIQKDISDEDLENLLDRSDLVVNSSADVKPPVSTFPLKGPGWEVVIPTASGGMLSTLNS* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3646 750 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 3 749 - -
Psa2g3646 750 MobiDBLite consensus disorder prediction 108 136 - -
Psa2g3646 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 414 IPR027417 -
Psa2g3646 750 MobiDBLite consensus disorder prediction 108 122 - -
Psa2g3646 750 Pfam Helicase conserved C-terminal domain 509 620 IPR001650 -
Psa2g3646 750 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 364 IPR014001 -
Psa2g3646 750 Coils Coil 48 68 - -
Psa2g3646 750 CDD SF2_C_SNF 496 630 - -
Psa2g3646 750 SMART ultradead3 180 375 IPR014001 -
Psa2g3646 750 SMART helicmild6 536 620 IPR001650 -
Psa2g3646 750 PANTHER SNF2/RAD54 HELICASE FAMILY 3 749 - -
Psa2g3646 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 706 IPR027417 -
Psa2g3646 750 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 666 IPR001650 -
Psa2g3646 750 Gene3D - 420 719 IPR027417 -
Psa2g3646 750 Gene3D - 148 413 IPR038718 -
Psa2g3646 750 MobiDBLite consensus disorder prediction 1 22 - -
Psa2g3646 750 Pfam SNF2-related domain 187 484 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3646 Psa-Chr2 392955341 392962215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3646 152 641 RAD5 or RAD16-like Gene Family AT1G02670 26.408 5.69e-41 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa2g3646 SNF2_N 1.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3646 K19001 - gmx:100777687 1170.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3646 2 392955341 392962215 Psa2g3646 2 392955341 392962215 ECH