Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3643 ATGCCTCCAAAGACGCCGAAGAGAGGGTCTGCATCCGGTGGTGCAAAGAGGGGTGGCAGACCATCGAGAGGGACTCCTAAGGCTGCACAGAATCAACCTGAAGCCGTGGAGGAGAAGATGGTGGTTGAGGAGGAGCCTAAGGTGGAAGAAAATCCCGCTGTTGAGGAAAAACCTGTGGTAGAAGAGAATCCTGTTGTTGAGGATAAAGCTATTGATGTGAATCAAACAACATCAGAGGCTGCTTCTGAAGAATCTATCAGGGTCTCTGCGATGAAAAAAGATGAAGAGGAGGTTAAAGAGTCTATAGATGAATATGAGAAGGATGAACAGTTGGGTGATGTGGAAGAAGAGGAACATCGCGAGGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGACGCTACAGAAGATGACCTGAAGAAGGTTTTCGGTGAAGTTGGGGTTGTTACTGAGGTCAGGCTGATGATGAATCCTCAAACTAAAAAGAACAAGGGATTTGCATTCCTGCGTTTTGAAAATGTGGAGCAAGCAAAACGAGCTGTAGCAGAGCTTAGAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTCTATTTAGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAACTGAAGCATTACGGAGTTACTAATGTTGAGGATGTGACTTTGGTTGAAGATTCTAATGATAAAGGGACAAACCGTGGATTTGCGTTCTTGGAATTTTCCTCACGTTCAGATGCTATGGATGCCTTTAAGAGGCTGCAGAAGAGGGATGTTGTGTTCGGAGTTGATAAGCCTGCAAAGGTTTCATTCGCAGATTCTTTTATTGACCCTGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATCGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAGTCTTCTCAAGAAATATGGCGAGGTTGAAAAGATTGAGCTTGCCAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGGTTTGTTACCTTTGGCTCACATGATGCGGCTATAAGATGCGCTGAAAGCATTACTGGTACCGAATTGGGTGAAGGGGAGAAGAAGGCAAAAGTGAGGGCTAGGTTATCAAGGCCACTTCAAAGAGGCCGCGGAAAACATGTTGGTCGTGGGGACTACCGCCCGGGCCGTGGATCTGCAATATTGTCAAGACCTTCTTGGAGCCGACCTGCACCCCGTAGTTTTTCTTCGCGTGGGGTAAGAGGAATTGGAAGTCGTGCGCTTCCAGTCAGGCCTATTAGTGCTAGAGATAGACGCCCTGTCATGTCTATACCGGTTAGAAGTAGGCCACTACCTCCTCCAGTTAGATCTTATGATAGAAGAGCAGCTGCCCCTGCATATTCAAAAAGTAGCTTGAAGCGAGATTATGGTCGGCGTGAGGATATACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGATCAAGAGTGGCCTCTGAAAGACGCCCATCTTATAGGGATTATCCACCCCGTGGATCTGAGTACTCTGATCTCCCTAGAAGTTCATCTCGTACTGCACCAAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTTTGAGAGGCCCCCTCCTCCACCCCCTCCCCATTCAAGTTATCGTGAAGGGCGACCTCGTGATTATGATGCTCCTCTACCTGGCTCAAAACGTTCTTATGCTGCTGTGGATGATGTTCCCCCGCGATACGCTGATACTGGTGCTCGTCAATCAAGAGCTCGAATGGAATATGATTATGGGGGCAGTGCTTCACAGTATGGTGATGCTTATGGTGATAGAGTTGGAAGATCAAATCTTGGATATGGCAGTGGCAGCCGAAGTTCAATTTCTGGTCAAGAATCACACGGGATGTATAGCAGTCGGCAGGGAACAGGTTATGGTGGAGGATCTTATGGTGGCAGTGATGTTGGAGGCATGTACTCGTCAAGTTATGGTGGTGATTACGTTTCTCGTGGAAGTGATGTTGGCGGCAGCTCATATTCGTCAATGTATTCTGGCAGAGGTGCGGGCGGCGGTAGCAGTTACATGGGCAGCGGTGGATCTGGATCTTATTATTGA 2151 0.4719 MPPKTPKRGSASGGAKRGGRPSRGTPKAAQNQPEAVEEKMVVEEEPKVEENPAVEEKPVVEENPVVEDKAIDVNQTTSEAASEESIRVSAMKKDEEEVKESIDEYEKDEQLGDVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLKKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDVTLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRSLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCAESITGTELGEGEKKAKVRARLSRPLQRGRGKHVGRGDYRPGRGSAILSRPSWSRPAPRSFSSRGVRGIGSRALPVRPISARDRRPVMSIPVRSRPLPPPVRSYDRRAAAPAYSKSSLKRDYGRREDIPPPRSRVAADYGSRVASERRPSYRDYPPRGSEYSDLPRSSSRTAPRRGYVDDGYSQRFERPPPPPPPHSSYREGRPRDYDAPLPGSKRSYAAVDDVPPRYADTGARQSRARMEYDYGGSASQYGDAYGDRVGRSNLGYGSGSRSSISGQESHGMYSSRQGTGYGGGSYGGSDVGGMYSSSYGGDYVSRGSDVGGSSYSSMYSGRGAGGGSSYMGSGGSGSYY* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3643 716 Gene3D - 299 414 IPR012677 -
Psa2g3643 716 MobiDBLite consensus disorder prediction 453 569 - -
Psa2g3643 716 MobiDBLite consensus disorder prediction 392 432 - -
Psa2g3643 716 MobiDBLite consensus disorder prediction 86 106 - -
Psa2g3643 716 Gene3D - 213 295 IPR012677 -
Psa2g3643 716 Coils Coil 88 111 - -
Psa2g3643 716 SMART rrm1_1 310 385 IPR000504 GO:0003723
Psa2g3643 716 SMART rrm1_1 133 206 IPR000504 GO:0003723
Psa2g3643 716 SMART rrm1_1 213 292 IPR000504 GO:0003723
Psa2g3643 716 SUPERFAMILY RNA-binding domain, RBD 303 410 IPR035979 GO:0003676
Psa2g3643 716 MobiDBLite consensus disorder prediction 484 498 - -
Psa2g3643 716 CDD RRM_SF 134 205 - -
Psa2g3643 716 Gene3D - 60 212 IPR012677 -
Psa2g3643 716 MobiDBLite consensus disorder prediction 37 68 - -
Psa2g3643 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Psa2g3643 716 MobiDBLite consensus disorder prediction 1 118 - -
Psa2g3643 716 CDD RRM_SF 311 376 - -
Psa2g3643 716 CDD RRM_SF 214 281 - -
Psa2g3643 716 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 111 - -
Psa2g3643 716 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 109 716 - -
Psa2g3643 716 SUPERFAMILY RNA-binding domain, RBD 133 278 IPR035979 GO:0003676
Psa2g3643 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 391 IPR000504 GO:0003723
Psa2g3643 716 MobiDBLite consensus disorder prediction 70 84 - -
Psa2g3643 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 376 IPR000504 GO:0003723
Psa2g3643 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 280 IPR000504 GO:0003723
Psa2g3643 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Psa2g3643 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 296 IPR000504 GO:0003723
Psa2g3643 716 PANTHER RNA RECOGNITION MOTIF 109 716 - -
Psa2g3643 716 PANTHER RNA RECOGNITION MOTIF 1 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3643 Psa-Chr2 391887480 391891794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3643 134 379 Eukaryotic Initiation Factors Gene Family AT4G34110 23.643 2.28e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3643 - - gmx:100779340 911.753