Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3617 ATGGGACACTGTACATGCGGTATGTTTCATGGACAAACACAAAACAATTCGTTCTCCATGTTATTCTCTAAACCTTACGACGAATCTCTTGAAACCTATTGCTTCACTCCTTCTTCTACTTCTTCTTCTGTTGATTGTACTCTCTCACTTGGAACTCCTTCCACTCGTTTCACTGAAGATGAAGAGAAACGAAACCGACATGAACGTCGCTCTGTTAAGAACTTCTGTTGGGATTTACTAACTCCCAAACAGTACAACACTACTCAAACTAAACCTACACGAGGAAGCAATATCAATCACACCAACAACAACAATAATGATTCTCTCCTTGCTCGCAGATGCGCAAACTGTGACACTACCTCTACACCCCTTTGGAGAAATGGCCCTCGTGGCCCAAAGTCACTATGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCAAGCGCTGCTGCTGCTACACCGACAGCGGTATCCGTCGGTGTAATGGAATCAGCTCCACTGTATAACCACCAGCACCACCAGCACAACCACAGCGCATGGTTTGTCCAACCGCAGAACCAGAAGACACAGTGCTTCTCTCAGGCAATTAATAACGAATTTCGCTTCATGGATGACTCTGATCGTGATTCTGAGAATGGCATTCCTTTTCTCTCTTGGAGACTCAACGTCACTGATAGAACAAGCTTCGTTCATGACTTTACCAGATGA 717 0.4477 MGHCTCGMFHGQTQNNSFSMLFSKPYDESLETYCFTPSSTSSSVDCTLSLGTPSTRFTEDEEKRNRHERRSVKNFCWDLLTPKQYNTTQTKPTRGSNINHTNNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATPTAVSVGVMESAPLYNHQHHQHNHSAWFVQPQNQKTQCFSQAINNEFRFMDDSDRDSENGIPFLSWRLNVTDRTSFVHDFTR* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3617 238 CDD ZnF_GATA 113 145 IPR000679 GO:0006355|GO:0043565
Psa2g3617 238 Pfam GATA zinc finger 114 148 IPR000679 GO:0006355|GO:0043565
Psa2g3617 238 ProSitePatterns GATA-type zinc finger domain. 114 139 IPR000679 GO:0006355|GO:0043565
Psa2g3617 238 SMART GATA_3 108 161 IPR000679 GO:0006355|GO:0043565
Psa2g3617 238 ProSiteProfiles GATA-type zinc finger domain profile. 108 144 IPR000679 GO:0006355|GO:0043565
Psa2g3617 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 111 151 - -
Psa2g3617 238 Gene3D - 110 153 IPR013088 GO:0006355|GO:0008270
Psa2g3617 238 PANTHER GATA TRANSCRIPTION FACTOR 18 2 237 IPR044272 GO:0003700|GO:0009908
Psa2g3617 238 PANTHER GATA TRANSCRIPTION FACTOR 18 2 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3617 Psa-Chr2 390724831 390726111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3617 5 238 C2C2-Gata Transcription Factor Family AT3G50870 43.403 1.05e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa2g3617 GATA 5.7e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3617 - - gmx:100790571 291.582