Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3613 ATGGGAAGCCACGTGGTAGATGGATGTGGCGAGTTTATGCCAAGCGGTGAAGAAGGTACTCCACAATCATTCATATGTGCTGCTTGTGATTGTCATCGAAATTTTCATCGAAAACATGTCCAATTACCACAACAGCAACAAGAACAACAACATCAACAACAAACGCAACATGTTGTTAATAACGGTCACGTTCAGTTTAACACACCTTCTTCTTCATCTCAAAGATTCTCACACCCCACTACTTCTGGACATGTTCCACCTTTGATGATGACCTTTGGATCAGGTCCAGCTGAATCATCAAGTGAAGATCTCAACATGTTGGGTGCACAATTTTCAATACAAACGCAGCAGCAGCAGCAGCAGCAAGTTTCTAAGAAGAGGATAAGGACGAAATTCTCACAGCTTCAAAAGGATAAGATGATGGAGTTTGCTGAAAGGATTGGGTGGAAGATCCAGAAACATGATGAACAAGAAGTTCAACAGTTTTGTTCTCAAGTTGGTATCAAAAGACAGGTTTTCAAAGTTTGGATGCATAATAACAAACAAGCTATGAGAAAAACAGGAAATGTAAGCTTAGCTTAG 582 0.4038 MGSHVVDGCGEFMPSGEEGTPQSFICAACDCHRNFHRKHVQLPQQQQEQQHQQQTQHVVNNGHVQFNTPSSSSQRFSHPTTSGHVPPLMMTFGSGPAESSSEDLNMLGAQFSIQTQQQQQQQVSKKRIRTKFSQLQKDKMMEFAERIGWKIQKHDEQEVQQFCSQVGIKRQVFKVWMHNNKQAMRKTGNVSLA* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3613 193 Gene3D - 111 187 - -
Psa2g3613 193 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 1 39 IPR006456 -
Psa2g3613 193 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 125 182 IPR006455 -
Psa2g3613 193 SUPERFAMILY Homeodomain-like 118 186 IPR009057 -
Psa2g3613 193 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 1 186 - -
Psa2g3613 193 Pfam ZF-HD protein dimerisation region 1 40 IPR006456 -
Psa2g3613 193 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 39 IPR006456 -
Psa2g3613 193 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3613 Psa-Chr2 390571325 390572535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3613 2 186 ZF-HD Transcription Factor Family AT2G18350 52.660 1.85e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa2g3613 ZF-HD_dimer 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3613 - - mtr:MTR_5g020510 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3613 2 390571325 390572535 Psa2g3613 2 390571325 390572535 ECH