Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3609 ATGAGAACTACTAGTGGTGAAATAGTGGAGACTTTACCAAGATCCTTTCAGGTACATAGTAAAATATGCATGGAATTGATGAGAATATTGGATGATATCATGAGGATATTTCCAGACATAGAGGAAGCACGACCAAGATGTTCATCAGGAATAGAATCTCTGGTTTATCTGAACAACGCGATTGAGAAAGCCAAACTACTTCTACAACATTGCTCCGAATGTAGCAAACTCTATCTGGCAGTGACAGGAGATACAGTACTTTTAAGATGCCAAAAAGCAAAAAAGTCATTAGAACAAAGCTTAATTCCCATTCAGGGTATGGTTCCAGTTGTGTTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTGCTACATTTGTTTTGGACTCTGCTGAAGAAGAGGCTGGGAAAGTTTTAACAGAATTGCTTCAGCAAGGTACTTCGAACTTGGATTCAGTGGAAGATTTTGAACTTAAAGCTCTTCAGTTTGCAGCACCGAGACTGAATATAACATCACAAAGGGCCTTATTAATCGAGGGACGGTCTATTAAGAAGTTGCTGGATAAAATTGGACCAAATGACCAGAAAAAGAAATCGATCTTGAGATATCTTATGCATCTATTGAAAAAACATGGAAAATCCATGGTGGTGGGAGAACACGTGGAGAAGGCTTATTCTCGTAGCAAAGAACCGACTGCAAAGGATAATAACTCTAGTCGGCATTCGCTACGAAGCCATCGTGTTGAGCCGGATCCTAGTTCGAAATATGATCAGTATGGAACTCAAACCAGTGAGTTGGATAAAGGGATACCACCTGAGGAATATAAGTGTCCAATATCCTCAAGATTGATGTATGATCCTGTTATCATTGCTTCTGGAGTAACATATGAAAGAATGTGGATAAAAAAGTGGTTCAATGAGGGTAAAACTACATGTCCAAAAACAAAAGATGAACTACCTCATATGACATTGACTCCAAATGTTGCCATGAAGGACTTAATATCAAAGTGGTGCAAAAATAATGGTGTTTCCATTCCTGATCCAAGTAGACACACAGAAGATTTTCAGATGTTGGATGCTTCAATCACCTCCATTAAGAGTTTAGGAAGTTATTTCAATGATTTGAACTTGCCACTGGATCTTAGTATCATGTCACTTGGATCATTGGATACTAGTTTTAACTCAGATACGTTGCGAGGTAAGACCAATCCTGACTTGAATTTGATGATGAGCAAGGCTAGTGAAGACTCTCACAAGCATGGAGCTCATGCACCAGAGATACATGATACAGATTTGATGCTCTTGCCTAAACTTCATGATCTTCAATGGGATTCTCAATGTAAGGTCATTGAAGATTTGAAAGATCATTTGAAAAGCAATAGCCAAGCTATTTCGTTCATGTCAGCTGAAAACTTAGTTGAACCACTAGTCAGATTTTTGAGCAATGCAAATGATCTGCAGGATGTAAAAGCGCTGAGATCTGGAACTCAGCTTCTGTTGGAATTTGTGAACAGCTGCAGAAATGGTATGGATAATTTATGCGAGGATACATTCATCATGTTGGCAAGTCTTCTTAATTCAGAAGTGATAGGAGAAGTACTTGCCATAATGGAAGAACTGTCTGGGGATGGAAATAGCAGAGCCAAAATTGCAGCATCAAGTGCACTCACTTCTGTCATAAAATTACTTGATTCTGATAATAAAGAGTTCCAACATCGAGCTATAAGAATATTATACAATTTTTCCTTCAATAGTGAAGTTTGTCCACACATGTTATCTCTGAATTGCATCCAAAAATTGCTTCCATTTTTCAAAGATCGAGCCGTTTTGAGATACTGCATATACATATTGAAAAACATATGTGACACAGAAGAGGGTATAAATTCAATTGCAGAAACAAAGGGATGCATAGCTTCTATTGCTGAAATACTTGAGACTGGAAGTAATGAGGAGCAAGAACATGCACTTTCTGTTCTTCTATCTCTATGTTCATGCTCTAAAAGTGTTGATTATTGTAAGTTGATTTTGGATGAAGAGATTATTGCTCCTCTTTTCTATATCTCACAGAATGGAAATGATAAAGGAAAAGAAAGTGCCTTGGAATTGCTTCATCTTTTGAGAGATGCAAAGTATGTTGAGAATGAAAATAACAGGTCCTCTCAACCAATTACCAACACCACTTTTGAAGATTCCAACAGTCACACAGAAGAAAATAGATCATCAAAAAGATCACAATTTCTGAAGAAACTAGGATTGTTCTCAAAACCTAGTTCACATGCATCAAAAACCAAAAAGTGA 2304 0.3746 MRTTSGEIVETLPRSFQVHSKICMELMRILDDIMRIFPDIEEARPRCSSGIESLVYLNNAIEKAKLLLQHCSECSKLYLAVTGDTVLLRCQKAKKSLEQSLIPIQGMVPVVLAVEVSRIIDDLECATFVLDSAEEEAGKVLTELLQQGTSNLDSVEDFELKALQFAAPRLNITSQRALLIEGRSIKKLLDKIGPNDQKKKSILRYLMHLLKKHGKSMVVGEHVEKAYSRSKEPTAKDNNSSRHSLRSHRVEPDPSSKYDQYGTQTSELDKGIPPEEYKCPISSRLMYDPVIIASGVTYERMWIKKWFNEGKTTCPKTKDELPHMTLTPNVAMKDLISKWCKNNGVSIPDPSRHTEDFQMLDASITSIKSLGSYFNDLNLPLDLSIMSLGSLDTSFNSDTLRGKTNPDLNLMMSKASEDSHKHGAHAPEIHDTDLMLLPKLHDLQWDSQCKVIEDLKDHLKSNSQAISFMSAENLVEPLVRFLSNANDLQDVKALRSGTQLLLEFVNSCRNGMDNLCEDTFIMLASLLNSEVIGEVLAIMEELSGDGNSRAKIAASSALTSVIKLLDSDNKEFQHRAIRILYNFSFNSEVCPHMLSLNCIQKLLPFFKDRAVLRYCIYILKNICDTEEGINSIAETKGCIASIAEILETGSNEEQEHALSVLLSLCSCSKSVDYCKLILDEEIIAPLFYISQNGNDKGKESALELLHLLRDAKYVENENNRSSQPITNTTFEDSNSHTEENRSSKRSQFLKKLGLFSKPSSHASKTKK* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3609 767 MobiDBLite consensus disorder prediction 226 255 - -
Psa2g3609 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 733 - -
Psa2g3609 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 347 IPR013083 -
Psa2g3609 767 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Psa2g3609 767 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Psa2g3609 767 PANTHER U BOX DOMAIN-CONTAINING 2 733 - -
Psa2g3609 767 SUPERFAMILY RING/U-box 263 350 - -
Psa2g3609 767 MobiDBLite consensus disorder prediction 226 269 - -
Psa2g3609 767 MobiDBLite consensus disorder prediction 717 746 - -
Psa2g3609 767 SUPERFAMILY ARM repeat 436 708 IPR016024 -
Psa2g3609 767 Pfam Armadillo-like 481 623 IPR006911 -
Psa2g3609 767 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Psa2g3609 767 MobiDBLite consensus disorder prediction 717 733 - -
Psa2g3609 767 Gene3D - 435 742 IPR011989 -
Psa2g3609 767 CDD RING-Ubox_PUB 277 319 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3609 Psa-Chr2 390359999 390363855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3609 9 729 U-box Gene Family AT4G36550 37.311 1.72e-140 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3609 - - mtr:MTR_5g020570 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3609 2 390359999 390363855 Psa2g3609 2 390359999 390363855 ECH
Psa2g3609 2 390359999 390363855 Psa4g2191 4 177323471 177327644 ECH
Psa2g3609 2 390359999 390363855 Psa4g2191 4 177323471 177327644 PCT