Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3608 ATGTCGTTGAGAAGTATAGTAAGGGAACTAAAAGAAATGAGGGATGGGATTGGTAACACATCGAGGAGAAGTGCAGGAGGAAGTAGACATTCACAGCGTCGGACAAAGTCACACATCGTCCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTTCTTGATATAATTCGGAGGGTAGAGGAGACCGAGACTTCTTGGCCTGCACGTGCTGTTGTTGTTTCTTGTGCTTCCGTGTGTAAATCATGGAGGGCTGTTACAAAAGAGATTGTCCAGACTCCCGAGCAGTGTGGAAGGTTGACATTTCCTATTTCATTAAAGCAGCCGGGTCCTCGTGATTCTCCGATTCAGTGCTTCATCAGGAGGGACCGAGAAACTTCTGCATATCTATTGTACTATGGATTGGTGCCATCTGAAAATGAGACTGATAAGCTGCTATTAGCTGCCAAAAAGATAAGGAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCCGATGATTTTTCTCGATCCAGCAATGCATATGTTGGAAAACTCAGGTCTAATTTTTTGGGCACCAAGTTCACTATATATGACAGCCAACCTCCACATGGAGCTGGAATTCAACCAAATATTCGGTCGAGTAGGAGATTCCATTCTAAGCAGGTATCTCCAAGAGTTCCAGCATGTAACTATATTGTTAGCTCCGTTGCCTATGAGCTGAATGTTCTCCGCACGAGAGGGCCAAGAAGAATGAACTGCGTCATGACCTCGATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAACATTTTTGTTCTACACCAGCACCAAAAGGTAAAGGTCCAATTGGAGATTTAAGCAACTCAACCTTCTCAGAGATGCTGCCGCTACAGAGCCAAGGTCCAATTGAGTCTCTGGTACTTAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAACTTCAAGGGCCGTGTTACAGTGGCTTCGGTTAAGAACTTCCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTGCCGCAGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAAATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1251 0.4444 MSLRSIVRELKEMRDGIGNTSRRSAGGSRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTKEIVQTPEQCGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNIRSSRRFHSKQVSPRVPACNYIVSSVAYELNVLRTRGPRRMNCVMTSIPVSAVQEGGNAPTPTSFPQITDEHFCSTPAPKGKGPIGDLSNSTFSEMLPLQSQGPIESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3608 416 Pfam Tub family 117 411 IPR000007 -
Psa2g3608 416 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 416 - -
Psa2g3608 416 MobiDBLite consensus disorder prediction 14 36 - -
Psa2g3608 416 SUPERFAMILY Tubby C-terminal domain-like 105 416 IPR025659 -
Psa2g3608 416 Gene3D - 49 105 - -
Psa2g3608 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Psa2g3608 416 PANTHER TUBBY-RELATED 1 416 - -
Psa2g3608 416 Pfam F-box domain 56 103 IPR001810 GO:0005515
Psa2g3608 416 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Psa2g3608 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Psa2g3608 416 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Psa2g3608 416 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Psa2g3608 416 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Psa2g3608 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Psa2g3608 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Psa2g3608 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Psa2g3608 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Psa2g3608 416 Gene3D Tubby Protein; Chain A 114 416 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3608 Psa-Chr2 390355700 390359779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3608 1 416 TUB Transcription Factor Family AT2G18280 64.508 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa2g3608 Tub 1.4e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3608 K19600 - gmx:100798958 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3608 2 390355700 390359779 Psa2g3608 2 390355700 390359779 ECH
Psa2g3608 2 390355700 390359779 Psa4g2193 4 177348246 177351414 ECH
Psa2g3608 2 390355700 390359779 Psa4g2193 4 177348246 177351414 PCT