Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3568 ATGGCTGGTATATTTTCATTAGGAAGTGGAGGGAGGTGTGAGGAAGAAGATAACCAAGAAAATAACACTATCAATATCAACCCACCACCACCAGGACCTGAATTCTGGTACAATAACCCCAACAAAACCGATGATTCTGTGGCCGGATACCGTGGTTTTGAGATTTGGAACCAGCAGCAGCAACACCAACACCAGTTTTTGCCTCTACAGCAAGATCTTTACACTGGTGTTGCCTTAGGAGTGGGGCCAAGTAGGGTTTTATCTTCTGATGACAATAGATCTGCGTTTGTGGTGGCTTCTGGAGGTGTTGGAGGGATAAGCTGTCAAGATTGTGGGAATCAGGCCAAGAAAGACTGTCCTCATGCTAGGTGCAGGACTTGCTGTAAGAGTCGAGGCTTTGATTGTCAAACTCATGTGAAGAGCACTTGGGTTCCTGCTGCAAGGAGAAGAGAGAGACAACAGCAACAACAACTTGCTGCTCCGAAACCACCACATCAATACGGAGATATTGCTCCCGAAACCAGGCAGAGAGATCTTAACAACAACCAAATCCCTAATTCTGCTTTGGCTTGTGCTCGTTTACCTCCAAACCCTTCAGGGTTAGTAGAGGAGGTGAGTTTTCCGGCTGTGGTGAACTCTCCGGCGGAGTTCAGGTGCGTGCGCGTTACTTCTGTTGATGATTCTGAGGAGGAGATTGCATATTCCACTGCTGTCAACATTGGAGGACATGTTTTCAGAGGAATTTTGTATAATTATGGTCCAGACATGAATAACAACTATATCTCTGCCGGAAACACCCCTCCTAGCGGCGGCGAAGCGGCGGCTCTTCCGTTGAATCTGATCTCACCTGTCCCTGGGGAACTTGTTGATCCTGCTTCCATGTATCCAGCTCCACTCAACACTTTCATGCCTCCTAGTGGTACGCAATTCTTCCCCAACCCAAGATCTTGA 951 0.4763 MAGIFSLGSGGRCEEEDNQENNTININPPPPGPEFWYNNPNKTDDSVAGYRGFEIWNQQQQHQHQFLPLQQDLYTGVALGVGPSRVLSSDDNRSAFVVASGGVGGISCQDCGNQAKKDCPHARCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQLAAPKPPHQYGDIAPETRQRDLNNNQIPNSALACARLPPNPSGLVEEVSFPAVVNSPAEFRCVRVTSVDDSEEEIAYSTAVNIGGHVFRGILYNYGPDMNNNYISAGNTPPSGGEAAALPLNLISPVPGELVDPASMYPAPLNTFMPPSGTQFFPNPRS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3568 316 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 207 254 IPR006511 -
Psa2g3568 316 MobiDBLite consensus disorder prediction 148 168 - -
Psa2g3568 316 Pfam Domain of unknown function (DUF702) 105 255 - -
Psa2g3568 316 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 316 - -
Psa2g3568 316 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 107 149 IPR006510 -
Psa2g3568 316 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 316 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3568 Psa-Chr2 388699331 388701724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3568 1 316 C2H2 Transcription Factor Family AT3G51060 43.750 3.30e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Psa2g3568 DUF702 7.3e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3568 - - gmx:100814589 295.819