Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3556 ATGGGTCGTGGGAAGATAGAGATAAAGTTGATTGAGAATCCAACAAACAGGCAAGTGACATACTCAAAGAGAAGGAATGGTATATTCAAGAAAGCTCATGAGCTTAGTGTTCTTTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAAAACAACAAGATGCATGAATACATCACACCTGGTCTTTCTACAAAGAAGATCATTGATCAGTATCAGAAGACTTTGGGGGATATTGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAGAACTTGAAGAAACTGAAGGATATTAACAATAAACTTAGAAGACAGATCAGGCATAGAATAGGTGAAGGTGGTTTGGAGTTGGATGATCTGAGTTTCCAGCAACTGAGAAGTCTTGAAGAAGATATGGTTTCTTCCATTGCCAAAATACGCGAGAGGAAGTTCCATGTGATCAAAACTAGGACTGATACATGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAACCTCCTTCTTGAACTAAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTCCATGATGAAGGAGATGAGGAATCAGCAGTTGCATTGGCCAATGGTGCTTCCACCTTGTATGCATTCTGTCAACACCATTCTCATATGAATATTCCTCACCACCATGGAGGAGGAGGAGAAGCCTTTAAAAACGACGATTTGCGCCTCGCTTGA 705 0.4057 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGGLELDDLSFQQLRSLEEDMVSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFLFHDEGDEESAVALANGASTLYAFCQHHSHMNIPHHHGGGGEAFKNDDLRLA* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3556 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Psa2g3556 234 Coils Coil 85 105 - -
Psa2g3556 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa2g3556 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa2g3556 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa2g3556 234 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa2g3556 234 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa2g3556 234 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 234 - -
Psa2g3556 234 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Psa2g3556 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa2g3556 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa2g3556 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Psa2g3556 234 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Psa2g3556 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Psa2g3556 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3556 Psa-Chr2 387590497 387592736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3556 1 220 MADS-box Gene Family AT3G54340 47.727 8.14e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa2g3556 K-box 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3556 K09264 - gmx:100784496 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3556 2 387590497 387592736 Psa2g3556 2 387590497 387592736 ECH