Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3552 ATGGAGTGCGTTGGAACAGCCTTGAAAACAAGTTTAAGGAAAGACATGGTACCTCAAACAATTGTCGACGAGGTTACAGGACTTAATGGACCAAATGGAACAACCTCGGACGATTTTTTCGTTGACGACCTCCTTGATTTCTCTCACGTTGACGATGAAGAACAACAAAACGAGGAAGAACAACAAGACTATGTTTGTGTCACTCTCAAACAGAGCAATGAAATTTCTAACCTTGACAACAGTTTCTCTCTCCAACAAGATTACGGTTCTTTGCCCACCAGCGACCTTAACGTTCCGAGTGATGATGTTGCGGACTTGGAATGGCTTTCTCATTTTGTTGAAGATTCTGATTCCTTCTCGGAATTCTCTGCTGCTATGCCGGTTGTAACTTTAACAACAACAACGGAGAAAAAACCGATGGTTCTTCCTGAGCCGAAGCTGGAGAAGAAAAACCCGGTTTTTACTTTCAAAACTCCGGTTCAGACCAAAGCTAGAAGCAAAAGAACAAGAACCGGTGTTCGGGTTTGGCCATTCGGGTCAACTTCTTTAACGGATTCTTCTACAAGCTCAACTTCATCTTCAACCTCTTCCTCTCCTACTAGCCCCTTGTTGATTTACACCAACTTACCACAGAGTTTTGACTCGGTTCCGGCGAGGAAACCGAAGAAAATGACATGTTTCAATGGTTTGGGTCACGGTGCGTTGGCTCTGGCGCCGCGACGGTGCAGTCATTGCGGTGTTCAGAAGACACCTCAGTGGAGAACTGGACCACTTGGAGCAAAAACGCTTTGCAATGCATGTGGGGTCCGTTATAAATCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGCCCTACATTTTCAAGTGAATTGCACTCCAACCACCACCGGAAGGTACTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAGTTGAAATTGAAATTGAAGCCAAAACCGAAACCGGTTTGTACTTCTCCGGTTGTTCCTAG 1002 0.4561 MECVGTALKTSLRKDMVPQTIVDEVTGLNGPNGTTSDDFFVDDLLDFSHVDDEEQQNEEEQQDYVCVTLKQSNEISNLDNSFSLQQDYGSLPTSDLNVPSDDVADLEWLSHFVEDSDSFSEFSAAMPVVTLTTTTEKKPMVLPEPKLEKKNPVFTFKTPVQTKARSKRTRTGVRVWPFGSTSLTDSSTSSTSSSTSSSPTSPLLIYTNLPQSFDSVPARKPKKMTCFNGLGHGALALAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEVEIEIEAKTETGLYFSGCS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3552 333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 299 - -
Psa2g3552 333 ProSiteProfiles GATA-type zinc finger domain profile. 236 272 IPR000679 GO:0006355|GO:0043565
Psa2g3552 333 PIRSF Txn_fac_GATA_plant 6 326 IPR016679 GO:0003677|GO:0005634|GO:0045893
Psa2g3552 333 CDD ZnF_GATA 241 289 IPR000679 GO:0006355|GO:0043565
Psa2g3552 333 Gene3D - 236 309 IPR013088 GO:0006355|GO:0008270
Psa2g3552 333 PANTHER GATA TRANSCRIPTION FACTOR 1 309 - -
Psa2g3552 333 Pfam GATA zinc finger 242 276 IPR000679 GO:0006355|GO:0043565
Psa2g3552 333 PANTHER GATA TRANSCRIPTION FACTOR 1 309 - -
Psa2g3552 333 ProSitePatterns GATA-type zinc finger domain. 242 267 IPR000679 GO:0006355|GO:0043565
Psa2g3552 333 SMART GATA_3 236 290 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3552 Psa-Chr2 387338751 387339890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3552 6 308 C2C2-Gata Transcription Factor Family AT5G66320 50.464 3.09e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa2g3552 GATA 4.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3552 - - vun:114172060 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3552 2 387338751 387339890 Psa4g2263 4 184215583 184217608 ECH
Psa2g3552 2 387338751 387339890 Psa2g3552 2 387338751 387339890 ECH
Psa2g3552 2 387338751 387339890 Psa4g2263 4 184215583 184217608 PCT