Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3549 ATGGCTTACGTGAACGGTTCTGTCGGTGGTGGTGTTAAGGATCTCTATGGTGAAGATAGTGCTACAGAAGATCAACTCATCACACCATGGAGTTTCTCTGTGGCTAGTGGATGCACTTTGCTCAGAGATCCACGTTACAACAAAGGTCTTGCTTTCACTGAGAAAGAAAGAGATGCTCATTACGTTCGTGGCCTTTTGCCTCCCGCTGTTTACACTCAAGATCTTCAGGAAAAGAGATTAATGCATAATCTTCGCCAATATGATGTTCCTCTTCATAGGTATATAGCCTTGATGGATCTTCAGGAGAGGAATGAGAGGCTGTTTTACAAGCTTCTCATCGACAATGTCGAGGAATTGTTACCGTTTGTTTACACTCCAACTGTTGGAGAAGCATGTCAGAAATATGGAAGCATTTATAGGCGTCCTCAGGGTTTATATATCAGTTTGAAGGAGAAAGGCAAGATCCTTGAAGTTCTTAAGAACTGGCCGGAGAAAACTATTCAAGTTATTGTTGTGACAGATGGTGAACGTATATTAGGACTAGGAGATCTCGGTGCCCAGGGAATGGGAATTCCTGTTGGGAAGCTTTCTCTATATACTGCAAACTACGGCGAGAAAATTCTCGTACAGTTCGAAGATTTCGCCAATCATAACGCGTTCGATCTTCTGGATAAATACAGCCCGTCACATCTTGTTTTTAATGATGATATACAGGGCACAGCTTCTGTGGTATTAGCAGGATTGCTTGCTTCCCTTAAGTTGATCGGAGGAACCTTAGCTGACAACACATTTTTATTCTTGGGAGCTGGAGAGGCTGGAACTGGTATAGCAGAGTTGATAGCTCTTGAGATTTCAAAGCAGACAAAAGCCCCGGTTGAAGAGACTCGCAAGAAGATCTGGTTTGTGGACTCTAAGGGTCTTATTGGTAGCTCTCGTCTGCAATCTCTTCAGCACTTCAAAAAGCCTTGGGCGCATGAGCATGAACCCGTGAAGGAGCTTTTAGACGCTGTCAAGGCAATCAAGCCAACCGTATTGATTGGATCATCTGGAGTAGGAAAGACATTTACCAAGGAGGTTGTTGAAACCATGGCATCCTTGAATAAGAAACCTCTCATTCTTGCACTCTCTAAGGCAATCAAGCCAACCGTATTGATTGGATCATCTGGAGTAGGAAAGACATTTACCAAGGAGGCCATTCCAGTACTCTTACAGGATCGTGAATGTTTTTCCTGTGCCCCAACCGGCTCTGGAAAAACCCTTGCATTTGTGTGTCCCATGCTCATGAAGCTCAAGGCTCATTCAAAAGGTGGCGTTCGAGCTGTTATCATCTGTCATAGCCATGAATTATCTGGTCAAACATACCGAGAATGCAAAAAGTTTGCCAAAGAGGAAAAGTTTCGTATCAAGTTAATGACAAAACATCTTTTAGAAGGTTCTGATTTTTCAAAATTTCCTTGTGACATACTTATATCCACGCCCCTTCGGTTACGCTTGGCTACCCAGAGGAAAAAGCTTGATCTCAGCAGAGTTGAGTATCTTGCCCTTGATGAGTCTGATAAGCTATTTGAGTCTGGAATGTTCAAGCAGATTGATAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTATAGCAATTCGGCAGAGTTTTGCAGAGAGTCTAAATCCTCCAGTATGGGTTTTTGTCCAAAGCAAGGAGCGAGTCAAGGAGCTGTATGGTGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTTTGATTTGTCTCAAGAAGAGCGAGAAAACGCAGTTGACAACTTCAGAGCTTGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGAGGAATGGATTTCAAAGGCATTAACTGCGTGATCAATTATGACTTCCCAGATTCTGCATCGGCATATATCCACGGAAATGGTCGATCTGATTTGGAAGATCGTTCAAATTCTTTTGATTCAAAGTCTGGTGTTGGCTACATTGAATGTGTTTTCCATCCAAGCAATTCTATTCAAGCTGATGAACTGGATTGCGAGGAACCATCATCTTCTCTTTCTGCAGTAGACCAATATGGAAACTCAAATGAAGGCCGGTCCATGTCAAACTTCTGCTCTTGTACCGCTGGAGCATTTGGTCAATTTGCAACAGGGATTGGTAATACTGATGCTGGTTTCGTTTTGGAAGCAGGGAAGCTTTTGCTCAAAATGCCTCCAACTCTGAGATTTGTATTGGATGGACGAATGCCAAGTTATTTGCTTGAAAAGGATTTAATTCTGCAAATTATTGGTGAATTATTGGTGGCCGGTGCAACTTACAAATCTATGGAGTTTGTTGGCAACCGTCGAAAGTTTAACTATGGAAGGACGAATGAATATGGATGCAACTCACAAAGACAATGA 2409 0.4238 MAYVNGSVGGGVKDLYGEDSATEDQLITPWSFSVASGCTLLRDPRYNKGLAFTEKERDAHYVRGLLPPAVYTQDLQEKRLMHNLRQYDVPLHRYIALMDLQERNERLFYKLLIDNVEELLPFVYTPTVGEACQKYGSIYRRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGAQGMGIPVGKLSLYTANYGEKILVQFEDFANHNAFDLLDKYSPSHLVFNDDIQGTASVVLAGLLASLKLIGGTLADNTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWFVDSKGLIGSSRLQSLQHFKKPWAHEHEPVKELLDAVKAIKPTVLIGSSGVGKTFTKEVVETMASLNKKPLILALSKAIKPTVLIGSSGVGKTFTKEAIPVLLQDRECFSCAPTGSGKTLAFVCPMLMKLKAHSKGGVRAVIICHSHELSGQTYRECKKFAKEEKFRIKLMTKHLLEGSDFSKFPCDILISTPLRLRLATQRKKLDLSRVEYLALDESDKLFESGMFKQIDKLVFTGSEEGKLIAIRQSFAESLNPPVWVFVQSKERVKELYGELAFDNIRVDVIHFDLSQEERENAVDNFRACKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHGNGRSDLEDRSNSFDSKSGVGYIECVFHPSNSIQADELDCEEPSSSLSAVDQYGNSNEGRSMSNFCSCTAGAFGQFATGIGNTDAGFVLEAGKLLLKMPPTLRFVLDGRMPSYLLEKDLILQIIGELLVAGATYKSMEFVGNRRKFNYGRTNEYGCNSQRQ* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3549 802 PRINTS Malic enzyme signature 107 131 IPR001891 GO:0004470|GO:0004471
Psa2g3549 802 PRINTS Malic enzyme signature 167 196 IPR001891 GO:0004470|GO:0004471
Psa2g3549 802 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 237 376 IPR036291 -
Psa2g3549 802 Gene3D - 539 659 IPR027417 -
Psa2g3549 802 SMART helicmild6 569 647 IPR001650 -
Psa2g3549 802 Gene3D - 235 378 - -
Psa2g3549 802 SMART ultradead3 386 583 IPR014001 -
Psa2g3549 802 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 646 IPR027417 -
Psa2g3549 802 Pfam DEAD/DEAH box helicase 396 534 IPR011545 GO:0003676|GO:0005524
Psa2g3549 802 CDD SF2_C_DEAD 532 645 - -
Psa2g3549 802 Gene3D - 35 202 IPR037062 GO:0004471
Psa2g3549 802 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 16 236 IPR046346 -
Psa2g3549 802 PANTHER MALIC ENZYME-RELATED 202 377 - -
Psa2g3549 802 PANTHER MALIC ENZYME-RELATED 7 201 - -
Psa2g3549 802 PANTHER MALIC ENZYME-RELATED 377 402 - -
Psa2g3549 802 SMART malic_2 101 227 IPR012301 GO:0004471
Psa2g3549 802 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 399 557 IPR014001 -
Psa2g3549 802 SUPERFAMILY Aconitase iron-sulfur domain 708 783 IPR036008 -
Psa2g3549 802 Pfam Malic enzyme, NAD binding domain 237 376 IPR012302 GO:0051287
Psa2g3549 802 Pfam Malic enzyme, N-terminal domain 101 201 IPR012301 GO:0004471
Psa2g3549 802 PANTHER MALIC ENZYME 377 402 - -
Psa2g3549 802 PANTHER MALIC ENZYME 7 201 - -
Psa2g3549 802 PANTHER MALIC ENZYME 202 377 - -
Psa2g3549 802 ProSitePatterns Malic enzymes signature. 233 249 IPR015884 GO:0004471
Psa2g3549 802 Gene3D - 389 538 IPR027417 -
Psa2g3549 802 Gene3D - 203 234 IPR037062 GO:0004471
Psa2g3549 802 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 699 IPR001650 -
Psa2g3549 802 Gene3D Aconitase, domain 3 707 786 IPR015931 -
Psa2g3549 802 SMART Malic_M_2 237 421 IPR012302 GO:0051287
Psa2g3549 802 Pfam Helicase conserved C-terminal domain 555 645 IPR001650 -
Psa2g3549 802 Pfam Aconitase family (aconitate hydratase) 709 783 IPR001030 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3549 Psa-Chr2 387249539 387252505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3549 412 646 Eukaryotic Initiation Factors Gene Family AT5G11170 27.148 1.55e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3549 K00029 - gmx:100818219 645.966