Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3537 ATGGAGGAACCGAAGTTGGAAACACTGACGACCGCGACAGTGACGGAGTTGGAGGCGAATCTAGTGGGAGCTCCTACGAAGGTTGTTGCCGATGTTGATGTTGATGTTGATGTTGATGTTAAGATGACGGAGAAGGACGGTTGTTTTTCTGCGCGTAAAGTAGTTCTTGCCGTTGCTGCCGCGGATAGTGATGTTTTGACGAAGAAGCGTGCTCGTCCAATGGTGGAAATTCCGAAAGCAGCACCTCCGCCGAAACTGAAGCAAAAGCAGAAGGTGAAGAAAGACGATGAGGATGTTTGTTTTATATGCTTCGATGGTGGAAGTCTAGTTCTCTGCGATCGTCGGGGCTGTCCTAAAGCATATCATCCGGCATGTGTCAAGAGAGATGAGGCGTTCTTCCGTGCAAAAGCCAAATGGAATTGCGGTTGGCATATATGCAGTTCTTGTCAGAAAGCATCACATTATATGTGCTATACTTGTACGTATTCTTTGTGCAAGGGGTGTATACAAGGTGCTGATTTTGTTTGTATTAGAGGGAATAAAGGTTTGTGTGGAATGTGCAAGAAAACTATAATGATGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTCGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGGTATATTTGAAAGCGGATTTATCTTTAACATTTGATGAGCTGCTTCGAGCTAAAAACCCATTGACAGGTGCTGCTCCTGTGGTTCGAACTTCCCATGAACTTTATCATGTTAATAAAGACGACAAAGGTTCTGGTTCTGAGAACTCCTGCATAGACATAGAATCAAATAATTTGAAAAACAAGAAGTCGAAGGGACCTTCAAGTGGTGACACGGGTGTGTCTCTGCCTGATTGTGCGAGTTGGGCATCAAAGGAGCTTCTAGAGTTTGTCTCACATATGAGAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATATAAAGAAAAACAATCTGCGTGATCCTCAACAAAAATCCCAAATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCACGTCTTGGCTACATTGAAATGCTAATGCTCCTTGAACCCCACTTCCTTGTAAAAGACAATACCCGTGCAGAAAATACTCTTGGAGCAGGAGTTAGTGATGCTATTGCTAATGAAAAGGAGGCCATGGAGAATTACAATAAACAGCCGATATTAGTTAACGATAAGAGAGGTTCAACAAGTAAAAGGGATGACGTGCCTGTGCCTCAAAATAATCAAGATGCATATGCTGCAATAAATGCTCACAACATTAACTTGATCTACTTGCGTCGAAGTCTGATGGAGAGTCTGACTGATGATACTGAAAGGATTCACGAGAAGGTTGCCGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCTTACAAAATTGGCACTAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAATCGGAAAGAGGTCATATCCATAGATGAGATTTCAAATCAGGAGTTTTCTGAGGATGAATGCAAGCGACTGCGTCAGAGTATAAAGTATGGGCTTTCAAAGAGATTGACAGTGGGAGAGATTCTGAACAAAGCGTTGACATTTCATGAAATTAGAGTTAATGATTTGTTGGAAGCTGAGAAATTGCGGCTTAATAATCTTCGTGATAGAGCAAGCGAGAAGGGGCACAGAAAAGAGCTTAAAGAATGTGTGGAAAAGTTGCAGCTACTAAGTTCACATGAGGAACGTCAGCGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCCAATTTGGATTCATTGTATGAGTCTGATGAAGATGCAGGAGAGTCGGATGGCAATAAACAAGATGGCAATATACCTATTTTTTCCAGAATTTGGGATGGTGTCTTGAATGGTGTTGGGGGCAGAACACGAGACTTGACCACAGCCAGTGACCCAATTGGAAATACATGCTTAGCAAAGAAGTATATTGACCCTAACGAAACTGCTGTTGATGATAGTGCTAGTGTTGTAATAAAATCAGAAGTGTCTAGTGTTGCAGTGGACATTTCATCTCCACTTCCCTCTACAGGGATTGAGCAGCCATTTGATGATTTTATGAATGATAAATCATGGCATTATCAGGATCCATCTAGTAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGATCTCAGAATATGGAGGATAGATGAGAAACAAGCAAACTCTATATTGTTAAATGATGCACTTAATGGGAAATGCTCCAAAAATGTGCCATTGCAGCACAGCAGCCTGTTGCTCTCTTTAGGAGCCAGTGTTGCATTGGGTGACAAAGAAAGCAGTCAGGATAGTGAGAGGAATTCAATACAGAATGAAATTTCTGCAGCAAGCCGAATCATAGAACATACGATAGAACATAAAGTGGACGATACTTCTACCCAGTCTAATGGTAAAGATGAATCTGTAAGGAGCAATGGATGGCATGACCAGTCACATGTACACCCTTTGCAACAACCAACCGTGTTTGCTGAGAAACTGAATGAGAATCATACCAACAAATTTAGTGAGAATCATGGGATTGAGAAAAACCCTGAAGATAATGGAAATCATGGCTTGGACAGGATTTCTGATGGTCAGAATCATCAGAAGCAATCAGATAGTGAAGACAACTCAGGGCAATCTTCGGGACAAAGCTGGAGACACCCTGATGTAAATATTTCTTCCAATTGCTTGGATACCACATCTGCTCATGTTTCTGAGACAAGAATATCACCACTTAGACTGGGATTTGATTTGACCCGTCCCCCTTCCCCTTCAACATGTAATACAATTACATGGCAGGCTATTATTGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAAGTTGAGGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCCATTATGAAACGTAGCGAGGAATTAACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTGCAGAGCTTAGCCCAATACTTGATGCAGGTAAGGGTGATGCATTGAGCTCCACATGTGATTTACAGTTACTATCTCAGTCCACAGTAGCAGAGGAGCCATTACAACAAGCTGATGTCCATCATCATCATCATCAAAGAATTTCAGGGGAGCTTTCCTCAAGAAATTCTAAAGTTGACGTGGGTTCAAACAACATTTGTGTTTCAAGTAATCAATGGGAGTCAGGCTCGGAAAATTCTTCTATTTTTCCATCCACTGAAACATTGAGCATGACCGTAGACACCACTTGGAGACTTGGGTTGGAGAGTAGTACACACTTGGGATGGGGAGGAATGGATCAACGGAATGCAAACACAAGCTGGGGAGTAGGACAGACGGCAGTGAACGAGAACAGAAGTTCAAATTCATGCAGTTCTGTAGTAACTCCAAGCTTTGGGGATAGCCAGACAAGATACGGAAGTGATCGGTTTTCTGTGCCCAGAGATCGGGGTTTTCCAGGTCATGGTAGGGAACAAGGATTAGTTAGAGGCAGAAATGCATGGAACAGGCAACCAGTATTTGGCGTTGGTAATGGAGGATCACACAGACCTCTGCCCAAAGGGCAACGGGTCTGTAAATTTTATGAAAGTGGATACTGTAGAAAGGGGGCATCCTGTGATTACTTCCATCCATGA 3795 0.4216 MEEPKLETLTTATVTELEANLVGAPTKVVADVDVDVDVDVKMTEKDGCFSARKVVLAVAAADSDVLTKKRARPMVEIPKAAPPPKLKQKQKVKKDDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRAKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCIQGADFVCIRGNKGLCGMCKKTIMMIENSAQGNKEMCEVDFDDKSSWEYLFKVYWVYLKADLSLTFDELLRAKNPLTGAAPVVRTSHELYHVNKDDKGSGSENSCIDIESNNLKNKKSKGPSSGDTGVSLPDCASWASKELLEFVSHMRNGDTSLLSQFDVQNLLLEYIKKNNLRDPQQKSQIVCDSRLVNLFGKARLGYIEMLMLLEPHFLVKDNTRAENTLGAGVSDAIANEKEAMENYNKQPILVNDKRGSTSKRDDVPVPQNNQDAYAAINAHNINLIYLRRSLMESLTDDTERIHEKVAGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFHEIRVNDLLEAEKLRLNNLRDRASEKGHRKELKECVEKLQLLSSHEERQRRLHEIPDVHSDPNLDSLYESDEDAGESDGNKQDGNIPIFSRIWDGVLNGVGGRTRDLTTASDPIGNTCLAKKYIDPNETAVDDSASVVIKSEVSSVAVDISSPLPSTGIEQPFDDFMNDKSWHYQDPSSKVQGPFSMLQLYKWNASGHFPPDLRIWRIDEKQANSILLNDALNGKCSKNVPLQHSSLLLSLGASVALGDKESSQDSERNSIQNEISAASRIIEHTIEHKVDDTSTQSNGKDESVRSNGWHDQSHVHPLQQPTVFAEKLNENHTNKFSENHGIEKNPEDNGNHGLDRISDGQNHQKQSDSEDNSGQSSGQSWRHPDVNISSNCLDTTSAHVSETRISPLRLGFDLTRPPSPSTCNTITWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFAELSPILDAGKGDALSSTCDLQLLSQSTVAEEPLQQADVHHHHHQRISGELSSRNSKVDVGSNNICVSSNQWESGSENSSIFPSTETLSMTVDTTWRLGLESSTHLGWGGMDQRNANTSWGVGQTAVNENRSSNSCSSVVTPSFGDSQTRYGSDRFSVPRDRGFPGHGREQGLVRGRNAWNRQPVFGVGNGGSHRPLPKGQRVCKFYESGYCRKGASCDYFHP* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3537 1264 SMART rtf1 441 551 IPR004343 GO:0003677
Psa2g3537 1264 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 977 1264 - -
Psa2g3537 1264 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 20 967 - -
Psa2g3537 1264 CDD PHD5_NSD 99 144 - -
Psa2g3537 1264 ProSiteProfiles GYF domain profile. 738 792 IPR003169 GO:0005515
Psa2g3537 1264 SMART swib_2 306 384 IPR019835 -
Psa2g3537 1264 MobiDBLite consensus disorder prediction 926 945 - -
Psa2g3537 1264 ProSiteProfiles SWIB/MDM2 domain profile. 298 381 IPR003121 -
Psa2g3537 1264 SUPERFAMILY FYVE/PHD zinc finger 94 144 IPR011011 -
Psa2g3537 1264 CDD GYF 738 793 IPR003169 GO:0005515
Psa2g3537 1264 Gene3D SWIB/MDM2 domain 298 388 IPR036885 -
Psa2g3537 1264 SUPERFAMILY GYF domain 737 791 IPR035445 -
Psa2g3537 1264 Gene3D - 442 571 IPR036128 GO:0003677
Psa2g3537 1264 SMART gyf_5 739 794 IPR003169 GO:0005515
Psa2g3537 1264 CDD SWIB-MDM2_like 304 379 - -
Psa2g3537 1264 SUPERFAMILY Plus3-like 442 571 IPR036128 GO:0003677
Psa2g3537 1264 Coils Coil 575 595 - -
Psa2g3537 1264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 188 IPR013083 -
Psa2g3537 1264 MobiDBLite consensus disorder prediction 846 875 - -
Psa2g3537 1264 MobiDBLite consensus disorder prediction 846 868 - -
Psa2g3537 1264 ProSiteProfiles Zinc finger PHD-type profile. 97 163 IPR019787 -
Psa2g3537 1264 Pfam GYF domain 741 784 IPR003169 GO:0005515
Psa2g3537 1264 Pfam Plus-3 domain 446 549 IPR004343 GO:0003677
Psa2g3537 1264 SUPERFAMILY CCCH zinc finger 1239 1263 IPR036855 GO:0046872
Psa2g3537 1264 ProSitePatterns Zinc finger PHD-type signature. 100 160 IPR019786 -
Psa2g3537 1264 Gene3D - 740 796 IPR035445 -
Psa2g3537 1264 SMART PHD_3 99 145 IPR001965 -
Psa2g3537 1264 MobiDBLite consensus disorder prediction 919 945 - -
Psa2g3537 1264 SUPERFAMILY SWIB/MDM2 domain 304 380 IPR036885 -
Psa2g3537 1264 ProSiteProfiles Plus3 domain profile. 441 574 IPR004343 GO:0003677
Psa2g3537 1264 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 20 967 - -
Psa2g3537 1264 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 977 1264 - -
Psa2g3537 1264 Pfam SWIB/MDM2 domain 306 379 IPR003121 -
Psa2g3537 1264 ProSiteProfiles Zinc finger C3H1-type profile. 1239 1264 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3537 Psa-Chr2 386537510 386544577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3537 96 177 PHD Transcription Factor Family AT5G36670 31.707 1.83e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Psa2g3537 Plus-3 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3537 - - aprc:113869503 1821.21