Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3531 ATGGCTGGTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGCTTCCTCGGCGCCGCCGCTGCCCTAATTTTCTCATGTATGGGTGCGGCTTATGGAACTGCGAAGAGCGGTGTTGGTGTAGCGTCGATGGGTGTGATGAGACCCGAACTTGTTATGAAATCGATTGTGCCTGTTGTTATGGCTGGTGTCTTGGGTATTTATGGTTTGATTATCGCTGTTATTATCAGTACCGGCATTAACCCTAAGGCTAAATCTTATTATCTTTTTGATGGTTATGCTCATCTTTCTTCGGGGCTTGCTTGTGGTCTTGCTGGTTTGTCTGCTGGCATGGCTATTGGGATTGTTGGTGATGCTGGTGTTAGAGCAAATGCTCAACAGCCGAAGCTTTTTGTCGGTATGATTCTCATTCTCATCTTTGCTGAAGCATTGGCATTGTATGGTCTCATTGTTGGCATCATCCTCTCTTCCCGTGCTGGCCAATCCAGAGCTGAGTAA 495 0.4727 MAGFSGDETAPFFGFLGAAAALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3531 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Psa2g3531 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 164 - -
Psa2g3531 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Psa2g3531 164 Gene3D - 10 161 IPR035921 -
Psa2g3531 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Psa2g3531 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Psa2g3531 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Psa2g3531 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Psa2g3531 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 164 - -
Psa2g3531 164 SUPERFAMILY F1F0 ATP synthase subunit C 13 76 IPR035921 -
Psa2g3531 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Psa2g3531 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
Psa2g3531 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Psa2g3531 164 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3531 Psa-Chr2 386248658 386253847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3531 1 164 Primary Pumps ATPases(2) AT2G16510 98.171 5.30e-111 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3531 K02155 - gmx:100777816 285.804