Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3530 ATGATGGAGTCCATGGAGTCATGTGTCCCACCAGGCTTTCGTTTCCACCCAACTGATGAAGAACTTGTTGGTTATTATCTCAGAAAGAAAATTGCTTCTCAGAAAATTGATCTTGATGTTATCAGAGAGATCGATCTTTATCGTATCGAACCATGGGATCTTCAAGATAGATGCAGGATAGGGTATGAAGAGCAGAACGAGTGGTATTTTTTCAGCCACAAAGATAAAAAGTATCCAACAGGTACAAGAACTAACAGAGCTACCATGGCTGGATTTTGGAAAGCTACAGGAAGAGATAAATCAGTTTATGACAAGATGAAACTTATTGGAATGAGGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAATGGACAGAAATCTGATTGGATCATGCATGAATATAGGCTTGAGTCTGATGAAAATGGTCCTCCACAGGAGGAAGGATGGGTTGTTTGTAGAGCATTTAAGAAAAGAGCAACAAATAGCCAAAGTACAAAAAACACAATGGAAAGATGGGACACAAGCTATTTCTATGAAGAAGGTGCAAGTAGGGTAAACAATTCCATGGTGGATCCAATTGAGCTTATCTCAAGGCAACCTCAAAGCTATTTATCTCAAACTTACAATATGTGTAAGCAAGAGATAGAAGCATGCATGCATGCAGAACAATTTATACAGCTTCCTCAGCTTGAAAGTCCTTCATTGCCAATAATAAAAAGGCCAAGCTCAGTGTCTCTAGTATCCGAGAATAATAACGATGATATCGATGATCAAAACAGGTTGTTATTATTATCATCCAACAACAATAATATTACTACAAATAATGTTACTGCTGATTGGAGAGATCTTGACAAGTTTGTGGCGTCTCAACTGAGTCATGAAGTTGAAATTGATCAAGGAGTGCTCTCAAGTTTTGGTGGAGGAACAAATAATATTCCAAGCTCAGATATGGCATTGCTGTTAATGCAGCAAGGTGGTAGGGATGAAGGGAACAAGTTTTTGAATGCTACCTCAGATTGCAGTGATATTGGAATATGCATATTTGAAAAATGA 1056 0.3797 MMESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRATNSQSTKNTMERWDTSYFYEEGASRVNNSMVDPIELISRQPQSYLSQTYNMCKQEIEACMHAEQFIQLPQLESPSLPIIKRPSSVSLVSENNNDDIDDQNRLLLLSSNNNNITTNNVTADWRDLDKFVASQLSHEVEIDQGVLSSFGGGTNNIPSSDMALLLMQQGGRDEGNKFLNATSDCSDIGICIFEK* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3530 351 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 5 326 - -
Psa2g3530 351 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Psa2g3530 351 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Psa2g3530 351 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 326 - -
Psa2g3530 351 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Psa2g3530 351 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3530 Psa-Chr2 386042670 386045611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3530 2 350 NAC Transcription Factor Family AT2G18060 62.567 1.62e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa2g3530 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3530 - - aprc:113869508 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3530 2 386042670 386045611 Psa2g3530 2 386042670 386045611 ECH
Psa2g3530 2 386042670 386045611 Psa4g2278 4 185311945 185314574 PCT