Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3516 ATGGAACAACCTCAACAACAGCAACAAAATGATCAGGAAAATGGTGGAGGTGGCAGTAGTGGAAAAGGGAGTGGTTTTATGAGCAGACAAAGTAGTACAAGGTGGACACCAACAACAGACCAGATAAGAATATTGAAGGATCTTTACTACAACAATGGAATTAGATCTCCAAGTGCTGAACAGATTCAGAGGATCTCTGCTAGGTTGAGACAGTACGGTAAGATTGAAGGAAAAAATGTGTTTTATTGGTTTCAAAATCATAAAGCTAGAGAAAGACAGAAGAAAAGGTTCACTTCTGATGTTAATGTTCTTCCCATCATTCAAAGACCTCCAAATAATATCTCTATTGCTTCTGCTAATTGGAAACCTGATCATGAACAACAACAACAACAACAATCCATTCTTCACACCAACCATTCCAATTACAACATTTCATCTTCTGGGCTTTCTTCTGCTTCATGTTCTTCTGCTGAGATGGTTGCTATAGGTTATGGATCTGTGCCTATGGAGAAGAGTTTTAGGGAGTGTACAATATCAGCTGGATGTAGCAGTAGTCAAGTTGGAAGCACCATGAACAACCACTTAGGATGGATTGGTCATCATCCTCATCATCATGTTGATCCATATTCTTCAGCTTATGCTAATTTATTTGAAAAAATAAGAGCAAATGATGAAATCATGGAAGAGGAACAAGAACAAGAATATGAAAATGGTTCACCTGAAATTGAAACGCTTCCTTTATTTCCTATGCATGGTGAAGACATTCATGGTGGATACTGTAACCTCAAGTCAAACTCATCTAACTATGGTGCTGGTCATGGTTGGTATCAAGGTGAAGATCATGGTTTCATCAATGGTTCTCGTACTACTTCCTTGGAACTTAGCCTCAACTCTTACACTCGTAGATCACCAGATTATGCTAATTGA 927 0.384 MEQPQQQQQNDQENGGGGSSGKGSGFMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVNVLPIIQRPPNNISIASANWKPDHEQQQQQQSILHTNHSNYNISSSGLSSASCSSAEMVAIGYGSVPMEKSFRECTISAGCSSSQVGSTMNNHLGWIGHHPHHHVDPYSSAYANLFEKIRANDEIMEEEQEQEYENGSPEIETLPLFPMHGEDIHGGYCNLKSNSSNYGAGHGWYQGEDHGFINGSRTTSLELSLNSYTRRSPDYAN* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3516 308 CDD homeodomain 33 95 IPR001356 GO:0003677
Psa2g3516 308 SUPERFAMILY Homeodomain-like 25 99 IPR009057 -
Psa2g3516 308 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 300 IPR044555 GO:0003700|GO:0099402
Psa2g3516 308 SMART HOX_1 30 98 IPR001356 GO:0003677
Psa2g3516 308 MobiDBLite consensus disorder prediction 1 38 - -
Psa2g3516 308 Pfam Homeodomain 32 93 IPR001356 GO:0003677
Psa2g3516 308 Gene3D - 27 93 - -
Psa2g3516 308 ProSiteProfiles 'Homeobox' domain profile. 28 94 IPR001356 GO:0003677
Psa2g3516 308 PANTHER PROTEIN WUSCHEL 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3516 Psa-Chr2 385451495 385453407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3516 26 258 Wox Gene Family AT2G17950 40.530 1.95e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Psa2g3516 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3516 - - gmx:100803815 326.635