Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3480 ATGGCCAAAAACAAAGACAAAGCAAGTTCTGATTCTGAAAATTCTTTATTTTCAACAGGTTCACACTCCTCAATGGGTAATAAGTATAGATACATGTTTAATAGATTATTCAGGTTTGCCAATTCATGGAAGAAAAGTAGCACACCAAGAGGTAGAAGAATTTTCCACAGAGATGTTGAAAAAGAAGAATTCCAATATGCTAGTAGTCACTGTCTTTCATCCTATTACAGTGTTTTTGTGGTTAGATTAGCAATCATGGTAATGCTAGCAATCCTGATAGGGCTATTGACAATATTAACATGGCATTTTACGAAGATTTATACCGCAAAATCACTGAGTAGTTTGGCGTATGGTTTGCGTTATGAACTTCTGCAACGTCCAATTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATCACAACAGCTCAAGTCAAGTTGTCTCAGTATGTTATCAGACGTTATAGCAATCCTGCAAGTCAAGCAGAGCAAGTTGAGCTATATGAAGCAATGAGAGCAGTAACATGGTCACTGTTTGCAAGTAGAAAAGCTCTAAACTCGATAACAATAAATTACAAGAATGGATTTGTTCAAGCATTCCATAGAGATCTAAAAGATAACAACACATTTTACATCTACTCAGATCTTTCAAATTACTCAATGGTTGCAACAACCTCAAACATGGTCAATACCCTCTCGACTCATCAAGCTTGGGATGACAAAACAATTCATGGAAACTTCTCAGCAATTTGGTATAGAGAACCACTTGATCCCGTCACAGGCGAAAAAATCGGAAAAGCAATGAAAATTGCACCAGAAGATTTAATAAACATCGCAGGACTTTCACAAGTTCCTGATGGTGTAGCTACATGGCATGTAGCAGTTAGTAAATTTACAGATTCGCCTTTGCTTTCAGCAGCGTTACCTGTTTGGGACTCTTCGAATAAAAGTATTATGGCTGTTGTTGGTGTTACAACTGCATTTTATAGTGTTGGACAGTTAATGAGAGAACTCGTTGAGATGCATAGTGGTCACATGTATTTGACTTCACAACAAGGCTATTTGCTCGCAACTTCTACAAGTGCGCCTTTACTTACAAATTCTACTAAGCCACCACCTAAGCTTAAGATGGCTGTGGATTGTGAAGATGGTATAATAAGACTTGGTGCTGAGTGGTTGCAGAGAACTTATGGGAATCATTTTCCTAATTCAACTCATGAGGTTCATGTTGAGAATGCTAAACTAGGTCACCAGGAATATTATATTGACTCATTCTACCTAAACTTGAAGAGGCTTCCTTTGGTAGGTGTAATCATCATACCAAGAAAGTATATAATGGGACAGGTGGATGAGAGAGCCTTCAAAACTTTGGTTATTCTGATATCAGCAGCTTTGTGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTGTCAAAGGAAATGAATCTAAGAGCAGAATTGATAAGTCAACTTGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAGTTCCTTGCAAATATGAGTCATGAACTAAGAACACCTATGGCAGCAGTAATTGGATTGCTGGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGTTCAACAGCTCTACTACGTCTTCTTAACAACATATTGGATCTAAGCAAGGTGGAATCAGGAAAACTTGTACTAGACGATGCAGAATTTGACCTGGGACGTGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAATGCATTAATCACAATGTAGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAAGTAGTTAGGGGTGACTCTGGTAGGGTTGTTCAAGTATTTGCAAATTTGATCAACAATTCAATTAAGTTTACTACATCTGGTCATGTTATTCTGCGAGGATGGTGCGAATATCCAAATTCGTGCGATAGTCCGACCTTTTATCTTGATCAGAAGAAATCAAGGATTATACAAAAGACCAAAGAGAAGCCAAATGCAAATCATGCAAGGAGAATATCTATGAGAGATAACAACAATGTGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATTGATCCCAGCAAATGGGATTCTGTGTTTGAAAGCTTCGAGCAGGCTGATCCATCAACTACCCGACTGCATGGAGGAACTGGTCTTGGTCTTTGCATTGTTAGGAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAAGGAACATTGATGAGATTATGTTTGCTTCTCAGAGCACCTATGGACGTCACAGAACAACAGTGTCCACTAAATTTGACAGACAATGGCTTAGTGGTATTGCTTGCACTACAAGGCAACATGAGTAGATTAGTAACATCAAAGTGGTTAACCAAAAAAGGGGTGTGCACAATGGAAGCATCTGAATGGAACGGACTGACTCAAGTTTTAAGGGAACTCTTTCATGCAAGAAGTTCAATCCATAATAACAACAACTTTGATGCACACTATCCAATAAATCTTGAAGGATTCAAGTCCAAACTACTCACCATAAAAGACATGAGGAACCCAATTTTTGTCATTGTTGTTGACATTAGTTTACTTGACTTAAGCACGGATATATGGAAGGAACAACTTAACTTCCTTCACAAGTATTTTGGAAGAGCAAAATTTGTATGGATGTTAAACCATGACACACCAAATACCATAAAGATGGAGCTTCGTAGGAAAGGTCACTTATTAATGGTTAACAAGCCTCTTTACAGAGGAAAAATGATTCATATTTTGGAAGCTGTTATGAAAAACAGAAATATTGAGCTACAAAAGAAAAACATGAAAGAGGGAGATTTGCATGAGTTTCTTGAGATTGATTCTACTCATTTTGACGCTGCTACTAGCTCTGATGATTCTGACTTATCTGAACTTAGTGAAAAACCAATTTTAAAGGTAACCAACGAAACTGAACATTTGGAAAAAAAAAAACTTAGGAGAGAAGAATCTTGTTCCTCATTTTCCACTGAAAAGCAAGATGAAAAATTTGAATGTGAGGGAACAAATAGGGAAACAAGGTCGAGAAAAGAAGTGAACGACAAGAAATCACTTGAGGGATTAAGGATTTTGCTTGCAGAAGATACACCTGTAATTCAAAGGGTCGCAACTATAATGCTTGAAAAACTGGGAGCTGTTGTTGTTGCTGTAGGTGATGGACAACAAGCCGTAGATGCTCTCAACTACATGGTAAGCGCTGAAGATTGTAGAAGAGAGTCTCTCCAGAAAGAAAGAAATACAAGATCACAAACCGAGATTTTGACTTGTCATCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAAGCAACAAAAGCAATAAGAAAATCAGAAGAAGGAACAGGAAAGCACATACCGATTGTTGCTCTAACTGCGCATGCAATGTCTTGTGATGAAGCCAAATGCCTTAAGGTTGGCATGGATGCTTACTTAACAAAGCCAATTGATTTCAAGCTTATGGTTTCCACCATTCTCTCACTCACTAAACCAACATCTTGA 3606 0.3766 MAKNKDKASSDSENSLFSTGSHSSMGNKYRYMFNRLFRFANSWKKSSTPRGRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRRYSNPASQAEQVELYEAMRAVTWSLFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVATTSNMVNTLSTHQAWDDKTIHGNFSAIWYREPLDPVTGEKIGKAMKIAPEDLINIAGLSQVPDGVATWHVAVSKFTDSPLLSAALPVWDSSNKSIMAVVGVTTAFYSVGQLMRELVEMHSGHMYLTSQQGYLLATSTSAPLLTNSTKPPPKLKMAVDCEDGIIRLGAEWLQRTYGNHFPNSTHEVHVENAKLGHQEYYIDSFYLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISAALCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLDDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSGRVVQVFANLINNSIKFTTSGHVILRGWCEYPNSCDSPTFYLDQKKSRIIQKTKEKPNANHARRISMRDNNNVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLRAPMDVTEQQCPLNLTDNGLVVLLALQGNMSRLVTSKWLTKKGVCTMEASEWNGLTQVLRELFHARSSIHNNNNFDAHYPINLEGFKSKLLTIKDMRNPIFVIVVDISLLDLSTDIWKEQLNFLHKYFGRAKFVWMLNHDTPNTIKMELRRKGHLLMVNKPLYRGKMIHILEAVMKNRNIELQKKNMKEGDLHEFLEIDSTHFDAATSSDDSDLSELSEKPILKVTNETEHLEKKKLRREESCSSFSTEKQDEKFECEGTNRETRSRKEVNDKKSLEGLRILLAEDTPVIQRVATIMLEKLGAVVVAVGDGQQAVDALNYMVSAEDCRRESLQKERNTRSQTEILTCHPYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMVSTILSLTKPTS* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3480 1201 Pfam His Kinase A (phospho-acceptor) domain 510 575 IPR003661 GO:0000155|GO:0007165
Psa2g3480 1201 ProSiteProfiles Histidine kinase domain profile. 516 774 IPR005467 -
Psa2g3480 1201 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 564 770 IPR036890 -
Psa2g3480 1201 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 622 772 IPR003594 -
Psa2g3480 1201 PANTHER TWO-COMPONENT HISTIDINE KINASE 1030 1198 - -
Psa2g3480 1201 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 1002 - -
Psa2g3480 1201 SUPERFAMILY CheY-like 1049 1197 IPR011006 -
Psa2g3480 1201 PANTHER OSMOSENSOR HISTIDINE KINASE 25 1002 - -
Psa2g3480 1201 PANTHER OSMOSENSOR HISTIDINE KINASE 1030 1198 - -
Psa2g3480 1201 Gene3D - 577 775 IPR036890 -
Psa2g3480 1201 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 497 576 IPR036097 GO:0000155|GO:0007165
Psa2g3480 1201 ProSiteProfiles Response regulatory domain profile. 1052 1197 IPR001789 GO:0000160
Psa2g3480 1201 SMART REC_2 1051 1193 IPR001789 GO:0000160
Psa2g3480 1201 SMART HisKA_10 509 575 IPR003661 GO:0000155|GO:0007165
Psa2g3480 1201 Pfam Response regulator receiver domain 1053 1192 IPR001789 GO:0000160
Psa2g3480 1201 SMART HKATPase_4 622 774 IPR003594 -
Psa2g3480 1201 CDD HisKA 510 571 IPR003661 GO:0000155|GO:0007165
Psa2g3480 1201 PRINTS Bacterial sensor protein C-terminal signature 699 713 IPR004358 GO:0016310|GO:0016772
Psa2g3480 1201 PRINTS Bacterial sensor protein C-terminal signature 717 727 IPR004358 GO:0016310|GO:0016772
Psa2g3480 1201 PRINTS Bacterial sensor protein C-terminal signature 734 752 IPR004358 GO:0016310|GO:0016772
Psa2g3480 1201 PRINTS Bacterial sensor protein C-terminal signature 758 771 IPR004358 GO:0016310|GO:0016772
Psa2g3480 1201 CDD REC_hyHK_CKI1_RcsC-like 1053 1193 - -
Psa2g3480 1201 Gene3D - 1029 1197 - -
Psa2g3480 1201 Gene3D - 497 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3480 Psa-Chr2 383462725 383469070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3480 23 1201 Histidine Kinase Gene Family AT2G17820 64.867 0.0 1562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa2g3480 HATPase_c 4.6e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3480 - - gmx:100814068 1918.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3480 2 383462725 383469070 Psa2g3480 2 383462725 383469070 ECH
Psa2g3480 2 383462725 383469070 Psa4g2362 4 190952991 190958017 PCT