Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3462 ATGACACTCAAAGCCTTTGTATCCCTGGTCTTCAATTTAATTGGCCTGGAAGAGGATGCAACTTTACCTTACTACCTTGTTGCCACCTCAATTGTCCCAAACAAGATCAATCAACAATCATCAGAATCTTCAACAACAACAACAACATCGAATGTTATTGAGAAAAGTAATGATGCTGGATTATGTTGTGTGTGCTTATCTATGTTAAACAACAAAGATGAAATTCGTGTTCTTCCTTGTTCGCATGAATTTCATAAGGTTTGTGTGAATAGTTGGCTAAAGGGTCATCATAAAACATGTCCATTGTGTCGTTTTTCAATGGGAGCTGAAGAAAAGACTCATCATGCTGAAATGTTTTCTGAAGAGATGCTGATATGGTTTTCTTCTTTTCATATAGCTGGTATGTAA 408 0.3627 MTLKAFVSLVFNLIGLEEDATLPYYLVATSIVPNKINQQSSESSTTTTTSNVIEKSNDAGLCCVCLSMLNNKDEIRVLPCSHEFHKVCVNSWLKGHHKTCPLCRFSMGAEEKTHHAEMFSEEMLIWFSSFHIAGM* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3462 135 PANTHER GB|AAF27103.1 2 119 - -
Psa2g3462 135 SMART ring_2 62 103 IPR001841 -
Psa2g3462 135 PANTHER TARGET OF ERK KINASE MPK-1 2 119 - -
Psa2g3462 135 SUPERFAMILY RING/U-box 61 109 - -
Psa2g3462 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 109 IPR013083 -
Psa2g3462 135 Pfam Ring finger domain 62 104 IPR001841 -
Psa2g3462 135 ProSiteProfiles Zinc finger RING-type profile. 62 104 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3462 Psa-Chr2 382756846 382758319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3462 55 104 C3H Transcription Factor Family AT5G45290 52.941 7.99e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3462 - - mtr:MTR_5g022770 203.756