Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3455 ATGGATTTCGTGCAAAATCCTTGTCCTTCTCCTTCATTTTTGTTCGGTTCCTTCGGGAATTTCGTTGACAAGGTTAAACAATTTGGAACTCTCGCTGTTTCCGCGATCATTGGGAACATTTTCTCTGCGATCTTGACCTTTTGCTTCGCATTAGTGGGGACGCTGTTGGGTGCTATGACAGGAGCTTTGATAGGTCAAGAGACAGAAAGTGGTTTCATTCGAGGTGCTGCTGTTGGTGCTATATCAGGAGCTGTTTTTTCGATTGAAGTGTTTGAATCATCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGTTGTCTTTTATATTTGATTGATGTTATTGCTAGCTTGTTGAGTGGAAGACTCGTGCGCGAGAGGATTGGTCCTGCAATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACCAGCTTTGATGAAGTTCAAAACCTCTTTGACATTGGTGGTTCTAAAGGGTTATCCGGAGATTCCGTTGCGAAAATCCCAAAAATCAAAATCACCACCGACAATGTCGATGCATCAGGGGAGAAAGTTTCTTGTTCGGTTTGTCTCCAGGACTTCCAGCTTGGAGAGACTGTTAGAAGTTTACCTCATTGTCATCACATGTTTCATCTACCTTGCATAGACATGTGGCTGTTGAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 705 0.434 MDFVQNPCPSPSFLFGSFGNFVDKVKQFGTLAVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNLFDIGGSKGLSGDSVAKIPKIKITTDNVDASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3455 234 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 17 234 - -
Psa2g3455 234 SMART ring_2 189 230 IPR001841 -
Psa2g3455 234 Pfam Ring finger domain 188 231 IPR001841 -
Psa2g3455 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Psa2g3455 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 234 IPR044523 -
Psa2g3455 234 CDD RING-H2_PA-TM-RING 189 231 - -
Psa2g3455 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 234 IPR013083 -
Psa2g3455 234 SUPERFAMILY RING/U-box 182 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3455 Psa-Chr2 382432231 382435065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3455 22 234 C3H Transcription Factor Family AT5G66070 77.465 2.03e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3455 - - lja:Lj2g3v1670720.1 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3455 2 382432231 382435065 Psa4g2395 4 192299690 192301214 PCT