Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3442 ATGTTGGCAATTGCAAAAGCAACATCAACAACAACAATGTTCAATTTCTCCACACTTGTGCATAATCCTCAATCCAACACACTTTTCTTCTCTCCATTCCCATTCCCCCCTTCTTCTGCCACACCCCGCAAATTTCAATCTCTCAAACTCCCCACAAACTGGAACCTCCACAATTCTCTCTCCTCATCCTACCAAAACGACAACTACGAAGAACATGTAATCGGAGATTGTCTCGTCTTCGAGGAAGGCATTTTCGAAGACCCCATATTTCCTACTCCTTCCGACAACCTCGTAGACAACAAAAAACCAAAACCCACTTCAAAGAAAAAGAAGAAAAAAACAGTAACCGTTGAGTCGGAGAATTTGGTTCCTGACAAGTGGAGAGATGTTCAAGCAGAGGCAAACATAACGAAGAAAGAGAGACGTAAGATAGCTCAGGAAATTGAGTTCAATAGTAAGGTTTTGAAGAAGAAAAGAGGGTTGGTTCCTTTGAGGCATATGGATTTGGATGATTACAAAGCTTATAGAGATGCTATGTTGGCTAAGTTGAAACCTGTGGTTCTTGATAAGCCTCCAAGTTTTAGTTTTGCTGAGAAAGAGGAAGAGTTGGAAGATGAATTGAGTGATGGGTCTGGTGAAGAACGTGTCGAGCCTAAGAATCCTAGGTGGGCTGTTTATGGAAGAGGTTTGGATGATGTCAATGAGTTTTTGAATAGTGAAAGTTATGATCTTGCTGTTAAGAAAACTGAAGGTCGTCCTAAGTTGTTTACAAAGGAGGAAAAGGCTTTGTTGAATAAGATTAAGCCAGACTTGTCAGTTGCAACTTCGAATAAATGGCTTCCTCTGCATACTTTTGCTGCGAGCGGAGAATCTTTCCTCTTACAAACTTTGTTGAAGCACGAGGTTGATATTAATGCTATGGATAAGGATGGTTTGACTGCTCTTTCAAAATCGATAATTGGAAGAAAGCGTGCCATAACTAATCTTCTCCTGCGAAACTCAGCCAATCCCTTTGTACAAGATAATGATGGGGCTACCTTGATGCATTATGCTGTACAAACAGCTTCTGTCCCAACAATTAAAGTGCTCTTGTTGTATAATGTGGATATAAATCTTCCGGACAATGATGGCTGGACACCATTACATCTTGCTGTACAAACTCAGAGAAATGATGTAGTAAGGCTTCTATTGATTAAAGGTGCTGATAAGACATTAAAAAACAAGGATGGTTTAACTCCACTTGACATTTGCCTCTACTCTGGTCAAAGTTTTAGAACATATGAGTTAATCAAGTTGTTGAAACAGTTTTCAAGACGCTTTCGAAATGCTCCAAAGGATACATCTCTTGAAGCAGCTTCCATGAACGGACTAACAATTGAAGAGTAG 1386 0.3997 MLAIAKATSTTTMFNFSTLVHNPQSNTLFFSPFPFPPSSATPRKFQSLKLPTNWNLHNSLSSSYQNDNYEEHVIGDCLVFEEGIFEDPIFPTPSDNLVDNKKPKPTSKKKKKKTVTVESENLVPDKWRDVQAEANITKKERRKIAQEIEFNSKVLKKKRGLVPLRHMDLDDYKAYRDAMLAKLKPVVLDKPPSFSFAEKEEELEDELSDGSGEERVEPKNPRWAVYGRGLDDVNEFLNSESYDLAVKKTEGRPKLFTKEEKALLNKIKPDLSVATSNKWLPLHTFAASGESFLLQTLLKHEVDINAMDKDGLTALSKSIIGRKRAITNLLLRNSANPFVQDNDGATLMHYAVQTASVPTIKVLLLYNVDINLPDNDGWTPLHLAVQTQRNDVVRLLLIKGADKTLKNKDGLTPLDICLYSGQSFRTYELIKLLKQFSRRFRNAPKDTSLEAASMNGLTIEE* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3442 461 ProSiteProfiles Ankyrin repeat profile. 376 408 IPR002110 GO:0005515
Psa2g3442 461 ProSiteProfiles Ankyrin repeat region circular profile. 376 408 - -
Psa2g3442 461 Gene3D - 231 348 IPR036770 -
Psa2g3442 461 ProSiteProfiles Ankyrin repeat profile. 277 309 IPR002110 GO:0005515
Psa2g3442 461 Pfam Ankyrin repeats (3 copies) 326 407 IPR002110 GO:0005515
Psa2g3442 461 SMART ANK_2a 376 405 IPR002110 GO:0005515
Psa2g3442 461 SMART ANK_2a 310 339 IPR002110 GO:0005515
Psa2g3442 461 SMART ANK_2a 277 306 IPR002110 GO:0005515
Psa2g3442 461 SMART ANK_2a 343 372 IPR002110 GO:0005515
Psa2g3442 461 SMART ANK_2a 409 442 IPR002110 GO:0005515
Psa2g3442 461 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN, CHLOROPLASTIC-LIKE 33 438 - -
Psa2g3442 461 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 33 438 - -
Psa2g3442 461 SUPERFAMILY Ankyrin repeat 263 422 IPR036770 -
Psa2g3442 461 ProSiteProfiles Ankyrin repeat profile. 343 375 IPR002110 GO:0005515
Psa2g3442 461 Gene3D - 349 458 IPR036770 -
Psa2g3442 461 MobiDBLite consensus disorder prediction 95 117 - -
Psa2g3442 461 ProSiteProfiles Ankyrin repeat region circular profile. 343 375 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3442 282 445 Ion Channels AT2G25600 32.317 1.39e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3442 - K12897 mtr:MTR_5g022050 617.076