Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3441 ATGGCGGATTCTCCAGTAAGAAGGCTTTCAAGATCCCCTTCCCCATGGAGGGGTCAATCAAGATCTAGGTCTAGGTCTCCGTCAAGGTCCGTTGAGAGGCACAGGCCTAGGTCGAGGTCTCTTGAAATGCAAAGGCCTAGGTCTCGGTCAAGGTCCATTGAAATGCAAAGGCCTGGGTCTCAATCAAGGCCTCTTGAAATGCAAAGGCCTGGGTCTCAATCAAGGCCTCTTGAAATGCAACGGCCTAGATCTCGGTCAAGGTCTCTTGAAAAGCCGAGGCTTAGGTCTCGGTCAAGATCTCTTGAAATGCAAAGGCCTAGATCTCCCTCGAGAGGCCGTGGCAGATCAAGATCAAGAAGTCCTCCTGATAGGAATGGTGGGGATACACTTTATGTAACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGTATATCTCGTGGTTTTGCGTTTGTTACTATGGATTCTGTTGAGGATGCAAACCGCTGTATCAAGTATCTGAATCAATCTGTTCTAGAGGGTCGCTATGTCACTGTTGAGCGGTCAAAGAGAAAGCGGCCAAGAACTCCCACACCCGGGCACTATCTTGGGCTGAAAAACACTAGAGAAATTGGATATCGTGATGATCGTGGAGGTGGAAGGTATCGGGGTGGATATGGTCGTGATGATTATCCATATCGCCGGTCTCCAAGGCCCTCCCCACCATATCGAGGTGGCAGGGATTATTCACCAAGGCACTCTCCCTATGGTGGCGGAAGGTATAGGAGGGATAGGTCTAGGTCACCTTATGCTCCATATGGAAGCCCAGATAGGAGGTATGCTCGGGGGTCTAGGTGA 903 0.5028 MADSPVRRLSRSPSPWRGQSRSRSRSPSRSVERHRPRSRSLEMQRPRSRSRSIEMQRPGSQSRPLEMQRPGSQSRPLEMQRPRSRSRSLEKPRLRSRSRSLEMQRPRSPSRGRGRSRSRSPPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEDANRCIKYLNQSVLEGRYVTVERSKRKRPRTPTPGHYLGLKNTREIGYRDDRGGGRYRGGYGRDDYPYRRSPRPSPPYRGGRDYSPRHSPYGGGRYRRDRSRSPYAPYGSPDRRYARGSR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3441 300 MobiDBLite consensus disorder prediction 202 300 - -
Psa2g3441 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 199 IPR000504 GO:0003723
Psa2g3441 300 MobiDBLite consensus disorder prediction 223 250 - -
Psa2g3441 300 SUPERFAMILY RNA-binding domain, RBD 121 236 IPR035979 GO:0003676
Psa2g3441 300 Gene3D - 66 213 IPR012677 -
Psa2g3441 300 MobiDBLite consensus disorder prediction 80 109 - -
Psa2g3441 300 CDD RRM_RBMX_like 127 206 - -
Psa2g3441 300 PANTHER RNA RECOGNITION MOTIF 77 296 - -
Psa2g3441 300 PANTHER RNA RECOGNITION MOTIF 2 71 - -
Psa2g3441 300 MobiDBLite consensus disorder prediction 26 52 - -
Psa2g3441 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 206 IPR000504 GO:0003723
Psa2g3441 300 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 77 296 - -
Psa2g3441 300 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 71 - -
Psa2g3441 300 SMART rrm1_1 129 202 IPR000504 GO:0003723
Psa2g3441 300 MobiDBLite consensus disorder prediction 53 79 - -
Psa2g3441 300 MobiDBLite consensus disorder prediction 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3441 Psa-Chr2 381988189 381990891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3441 124 213 Eukaryotic Initiation Factors Gene Family AT1G49760 30.000 1.72e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3441 K12897 - gmx:100527350 273.478