Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3416 ATGATACCTAACAAGAGGGCTGTATCAGAAAGAAATGAAGTTCTTGACAAGAAACAAGTGGATCCTGTTCATAGACCCATCACTAGGAGGTTTGCGGCGAAAATTGCTAGCACTCAAAAAGTTAAGGCTGAGGGGACTAACAAAAGGTCAAACTTGACAAATTCAAATGGATTTGGAGAATGTATATTTGTGGATGATGAACATAAGCTGGTGGAAGACCAGCCAGTGCCAATGGCTTTAGAGAAAACAGAACCGATGCGAAACGAATCAGATCAGATGGATGAAGTTGAGATGGAGATGGAGGATATGATGGAAGAGCATGTTTTGGACATTGACATTTCGGATGCAAATGACCCTCTTGCAGTTGCTGAATATGTTGAAGATCTTTATGCTTACTACAGAAAAGTTGAGAGTACTGGCTGTGTCTCACCTGATTACATGGCTGAGCAATTTGACATTAATGAAAGGATGAGGGCCATACTGATTGACTGGCTTATTGAGGTGCATGATAAATTTGACCTCGTGCATGAGACATTGTTTCTCACAGTTAATCTTATAGACAGATTTTTGGAAAAGCAATCAGTGGTAAGAAAGAAGCTTCAGCTGGTTGGTCTAGTGGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCTGTGCCTGTGGTTGGAGATTTAATTCTTATATCAGACAGAGCATACACTAAGAAAGAAGTTCTTGAAATGGAGAAGTTGATGGTCAACACATTGAAGTTTAACATATCCGTGCCAACAGCATACGTTTTCATTAGAAGGTTCCTAAAGGCAGCTCAAGCAGACCGAAAACTTGAGCTGCTAGCCTTCTTCTTGGTAGAGCTATCTCTAGTAGAATATGCTATGTTGAAGTTCCCTCCTTCTCAACTAGCTGCAGCTGCTGTCTATACTGCTCAATGTGCTACCTATGGTTTCAAACAGTGGAGTAAGACATGTGAATGGCACACCAACTACTCAGAAGATCAACTATTAGAGTGCTCTAGTTTAATGGTTGATTTTCACAAGAAGGCTGGGACAGGGAAACTTACGGGGGCACATCGGAAGTATTGCACATCAAAATTTATCTTTACTGCAAAATGTGAACCAGCAAGTTTTCTTCTAGAGAACTAG 1140 0.4079 MIPNKRAVSERNEVLDKKQVDPVHRPITRRFAAKIASTQKVKAEGTNKRSNLTNSNGFGECIFVDDEHKLVEDQPVPMALEKTEPMRNESDQMDEVEMEMEDMMEEHVLDIDISDANDPLAVAEYVEDLYAYYRKVESTGCVSPDYMAEQFDINERMRAILIDWLIEVHDKFDLVHETLFLTVNLIDRFLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDRAYTKKEVLEMEKLMVNTLKFNISVPTAYVFIRRFLKAAQADRKLELLAFFLVELSLVEYAMLKFPPSQLAAAAVYTAQCATYGFKQWSKTCEWHTNYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYCTSKFIFTAKCEPASFLLEN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3416 379 SUPERFAMILY Cyclin-like 117 253 IPR036915 -
Psa2g3416 379 PANTHER CYCLINS 34 376 IPR039361 -
Psa2g3416 379 PIRSF Cyclin_A_B_D_E 1 379 IPR039361 -
Psa2g3416 379 Pfam Cyclin, C-terminal domain 256 371 IPR004367 -
Psa2g3416 379 Pfam Cyclin, N-terminal domain 128 254 IPR006671 -
Psa2g3416 379 ProSitePatterns Cyclins signature. 158 189 IPR006671 -
Psa2g3416 379 SUPERFAMILY Cyclin-like 255 373 IPR036915 -
Psa2g3416 379 SMART cyclin_7 260 342 IPR013763 -
Psa2g3416 379 SMART cyclin_7 163 247 IPR013763 -
Psa2g3416 379 CDD CYCLIN 157 246 IPR013763 -
Psa2g3416 379 Gene3D - 128 365 - -
Psa2g3416 379 Coils Coil 86 106 - -
Psa2g3416 379 PANTHER CYCLIN-B2-1 34 376 - -
Psa2g3416 379 CDD CYCLIN 254 341 IPR013763 -
Psa2g3416 379 SMART Cyclin_C_2 256 373 IPR004367 -
Psa2g3416 379 Gene3D - 142 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3416 Psa-Chr2 380990633 380993708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3416 4 377 Core Cell Cycle Gene Families AT1G20610 58.511 2.61e-158 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3416 K21777 - gmx:100798068 592.038