Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3409 ATGCATTTGGTTGCTCTTTTAGGATTCTGCATTAATGGAAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGAACATTAACACAACATCTATTTGATTGGGGTGAAAACGGATGTGCTCCTTTGACTTGGAAACAAAGGGTAGCAATAACTTTGGATGTAGCGCGGGGAGTTGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCTAACATACTATTGGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGTTTGGTTAAAAATGCACCTGATGGGAAATATTCCGTTGAGACGAGGCTGGCAGGAACATTTGGATATTTGGCACATGAATATGCAGCCACTGGAAGAGTGACAACCAAAGTAGATGTTTATGCATTTGGAGTAGTTTTGATGGAATTGATTACTGGTAGAAGGGCATTGGATGATACTATGCCTGATGAACGATCTCATTTGGTTTCATGGTTCCGCCGAGTACAAGTCAACAAGGAGAACATCCCTAAAGCAATCGATCAAACATTGAACCCCGACGAAGAAACCATAAAGAGCATATATAAAGTGGCTGAGCTAGCAAGCCATTGCACTGCTCACGAACCATACTAG 630 0.4175 MHLVALLGFCINGNERLLVYEYMPQGTLTQHLFDWGENGCAPLTWKQRVAITLDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAHEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTMPDERSHLVSWFRRVQVNKENIPKAIDQTLNPDEETIKSIYKVAELASHCTAHEPY* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3409 209 ProSitePatterns Serine/Threonine protein kinases active-site signature. 70 82 IPR008271 GO:0004672|GO:0006468
Psa2g3409 209 SMART serkin_6 2 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3409 209 PANTHER OSJNBA0070M12.3 PROTEIN 2 209 - -
Psa2g3409 209 ProSiteProfiles Protein kinase domain profile. 1 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3409 209 Gene3D Transferase(Phosphotransferase) domain 1 24 209 - -
Psa2g3409 209 PANTHER RECEPTOR-LIKE KINASE TMK4 2 209 - -
Psa2g3409 209 SUPERFAMILY Protein kinase-like (PK-like) 2 208 IPR011009 -
Psa2g3409 209 Pfam Protein tyrosine and serine/threonine kinase 2 171 IPR001245 GO:0004672|GO:0006468
Psa2g3409 209 Gene3D Phosphorylase Kinase; domain 1 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3409 Psa-Chr2 380662933 380663562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3409 2 207 Glycoside Hydrolase AT3G07070 45.714 1.74e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Psa2g3409 PK_Tyr_Ser-Thr 2.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3409 - - lja:Lj0g3v0075369.1 406.371