Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3396 ATGGGAGGTGACGCTGCCGAGAGTGCGACGGAGCCACAAACCACCGACGGAGTTAAGATCAACATTCGTTGCTCCAATGGTTCCAAGTTTTTCGTTCATGTTAGCCTTGAATCTACCGTCCGTTCGTTTAAGGATGCTGTCGCTCAGAACTGTGATATCTCTGCTGACCAACAACGTTTGATTTATAAGGGTCGGATCCTCAAGGACGATCAAACCCTTCAAAGCTACGGTTTGGAGGCAGATCACACTGTTCATTTGGTTCGTGGCTTTACTCCTGCCAATACAACTGGTGGGACTAATACCAGTGGTGCCAATACCACAACTACTAATGCTAGAGCTGCTGGTGCTAATGAGGGTGGGGGATTAGGAGGAGCCGGACTTGGAGCTTCACTGTTTCCAGGACTAGGTATCAATGGGATGGGTGGAGGTGGTGGTCTCAATAGCTTATTTGGAGCGAGCCCTCCAGATCTTGATCAATTGCAGCAACCATTTATGTCAAATCCCAATTTAGTGAGAGAAATTATGAACTCGCCTGCCATGCAAAATTTATTAAATAACCCTGATATAGTGCGCAACCTTCTAATGAGTAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCAAGCACACTTCGCCAGACACTTGAGGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGGTTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGCAATACAGGAAATGACAGTACCGGAATTTTGGGGACTCAAGGTGGCCAAACAAGGAATCAATCGACCAATCCCTCGACTACCAGTGCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTGCAACTGGAGGTGCCCAAAGTAACGTCAGGAGGTCAACTACTGGTGTGGAAGCTCGGCAGCAGACACCCACTGGCTTAGGTGGGCCTGGTATGCCAGATCTTGAAGGCATGTTGGGTGGTTTGCCAGATGCCAGTTCATTGAGCCAATTTATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCTCAAACAATGAATCAGATTCTTGGTATGAATACTGATCAGCGTGGGGTGCCTGATCTAAATTCAATGAGAGAGGTGATGCAAAACCCAGAGTTTCTTCGCATGTTTTCCTCACCCGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACCCAGCTTGGTCAGCAGCAATCAACACAGGAACCAGGTCAAGCAGGTGGAGGCACCGGACCAGCGAACAACGCGGGGCTGGAGATGTTGTCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCACCAGAGCAATTGTATGCTACCCAACTTTCCCAGCTTCAAGAGATGGGATTCTTTGACACGCAAGAAAACATAAGGGCTCTTATTGCTACATCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACCCTGGACAGTAG 1626 0.4754 MGGDAAESATEPQTTDGVKINIRCSNGSKFFVHVSLESTVRSFKDAVAQNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPANTTGGTNTSGANTTTTNARAAGANEGGGLGGAGLGASLFPGLGINGMGGGGGLNSLFGASPPDLDQLQQPFMSNPNLVREIMNSPAMQNLLNNPDIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDSTGILGTQGGQTRNQSTNPSTTSAEATSPVPNTNPLPNPWSSAATGGAQSNVRRSTTGVEARQQTPTGLGGPGMPDLEGMLGGLPDASSLSQFMQNPAISQMMQSILSNPQTMNQILGMNTDQRGVPDLNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQAGGGTGPANNAGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNPGQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3396 541 Gene3D - 6 102 - -
Psa2g3396 541 Pfam Ubiquitin family 20 87 IPR000626 GO:0005515
Psa2g3396 541 SUPERFAMILY Ubiquitin-like 13 102 IPR029071 -
Psa2g3396 541 MobiDBLite consensus disorder prediction 289 352 - -
Psa2g3396 541 CDD Ubl_Dsk2p_like 18 90 - -
Psa2g3396 541 Gene3D - 193 250 - -
Psa2g3396 541 PANTHER UBIQUILIN 3 541 - -
Psa2g3396 541 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 493 538 IPR015940 -
Psa2g3396 541 Pfam UBA/TS-N domain 499 535 IPR015940 -
Psa2g3396 541 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 541 - -
Psa2g3396 541 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Psa2g3396 541 Gene3D - 481 541 - -
Psa2g3396 541 SUPERFAMILY UBA-like 495 537 IPR009060 GO:0005515
Psa2g3396 541 SMART uba_6 499 537 IPR015940 -
Psa2g3396 541 SMART ubq_7 18 89 IPR000626 GO:0005515
Psa2g3396 541 SMART CBM 143 184 IPR006636 -
Psa2g3396 541 SMART CBM 197 236 IPR006636 -
Psa2g3396 541 SMART CBM 355 397 IPR006636 -
Psa2g3396 541 SMART CBM 400 435 IPR006636 -
Psa2g3396 541 CDD UBA_PLICs 499 537 - -
Psa2g3396 541 MobiDBLite consensus disorder prediction 289 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3396 Psa-Chr2 380280823 380287203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3396 18 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 2.17e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3396 K04523 - gmx:100797539 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3396 2 380280823 380287203 Psa2g3396 2 380280823 380287203 ECH
Psa2g3396 2 380280823 380287203 Psa4g2429 4 194770755 194775455 PCT