Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3382 ATGACACGAGCGCTAAGAATTCTCACTGAAAATATCAACACCGCCGCGGTAACAGCGCCGCCGCCGGAGGCCGTGGCTTTGGAGTCAGATTTCGTTGTGATTCTCGCTGCCTTGCTTTGTGCTCTCATATGCGTTGTAGGACTCATCGCAGTCGCTCGTTGCGCGTGGCTCCGACGAGACTCCGGTACCGGAAATTCACCTCAACAAGCTTTAGCTAACAAGGGACTGAAGAAGAAGGTTCTTCAATCGCTTCCTAAATTCGCTTACGTCGATAGCAACCCTACGAAATGGTTGGCGACAACGGAATGCGCGATTTGTCTTTCTGATTTCGCCGCCGGCGATGAGATCCGCGTACTACCGCAGTGTGGACACGGATTCCACGTTGCCTGCATAGACACGTGGCTTGGGTCCCACTCTTCTTGCCCTTCATGTAGACAGATTCTGGCGGTCACCAGGTGTCAGAAGTGTGGCCGATTCCCGGCGACCGGAGCGGAAGCAACAGCCGTTACCGTTACTGAACAAGAGTCGAAATCTGCAGAAGACAGCAATGTTGGTGCAAATAGTAATAATAATTGTAGCGGGGGTGTTAGTAGTAGTAATAATTCTGGAAATCACAGCCACAGTGTAAACAGTGGGTTCTTGCCTTAA 648 0.5123 MTRALRILTENINTAAVTAPPPEAVALESDFVVILAALLCALICVVGLIAVARCAWLRRDSGTGNSPQQALANKGLKKKVLQSLPKFAYVDSNPTKWLATTECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGAEATAVTVTEQESKSAEDSNVGANSNNNCSGGVSSSNNSGNHSHSVNSGFLP* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3382 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 180 - -
Psa2g3382 215 Pfam Ring finger domain 102 145 IPR001841 -
Psa2g3382 215 MobiDBLite consensus disorder prediction 196 215 - -
Psa2g3382 215 CDD RING-H2_PA-TM-RING 102 145 - -
Psa2g3382 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 180 - -
Psa2g3382 215 SUPERFAMILY RING/U-box 81 150 - -
Psa2g3382 215 SMART ring_2 103 144 IPR001841 -
Psa2g3382 215 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Psa2g3382 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3382 Psa-Chr2 379324086 379326021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3382 1 156 C3H Transcription Factor Family AT1G76410 64.417 1.02e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3382 - - gmx:100787383 306.605