Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3380 ATGGCTTCTCGCTCATCACCGCCCGAGATTAACATTAAACCTGAGTATTGTCAAGAAGCTCTTATTCAATGGTACCGCTTAGCCAAATTAGGAGATCGTAAGGAGAGCTTTCGTAGAAAGGATTTGGTTTTGAAAGCAAAACAACATCTTCTTTTTTTAGGTTGGAAAGTTCAGTATATTAGCAAAAAGTGTAGATGGAAAATGTGTTATACTTCTCCTACAAATCGTAAACACTATTTTAATCTTAGAAGAGCTTGCAAGAATTGTATTAAAGACGAAGGTTATTCCGTCAATAATCTTTCAACTACACCACAAGCATCCCCAACAAATTTAATATCTTCAGCCACATTACCGTCAAAAAAGAGACCAAGAGCTTTTGAAGAAACTGATGAATTGAATTTCAATAAGGATTATGGAGCCTCTATTTCCAGTCCTGTTAAAAAACCTATTGTGACAACAACATCAACATCAGAGGAAAATGAGAAACATGGGTGTCAATCTGAACCAAAATTTCCTGATTTAGTGGGTAATAATGGTAGAAGAGGAAAGGTAATAAAGATGAGTGTAATGGAGAAGACTTCAGAGGGTTATGGAAAACAAGGGAAGGTATTAAATATGAGTACAAGGAAAAGGTATACACTTGTTTCTTGGTTGATAAATAATAAAGTTTTGATTCCGAATACTAAAGTTTCTTGTCGTGGTAGAAACAATATTGTTAAAAGAGGGAGTTTATCTATTGACGGTATAGTTTGCGATTGTTGTCAAATTACTTTTCCTATCACTAAATTTGAGGCTCATGCTAGTTGTACACGACATAGACCATCCACAAGTATCATGTTGGATGATGGAAGGTCATTGTTAGAATGTCAAAGGGATGCTCTGAGTTTGCGTGATCAAAAGAATGATCATTTTGTTTTCGGAGAAAATGTTAAACAAGAGAACGACAGTGTTTGTTCTATTTGTGGTCTTGGAGGTAGCATAATTCTTTGTGATCGATGTCCATCTTCATTCCATATTTATTGTTTAAATCTTGATCGAGTTCCAGATGGTGACTGGTTTTGTCCAAGTTGTTGCTGTAAAATATGTCATCAACCCAAATCCAAACAAGAATGCAATGCTCAGAATGATAATAATATTCTTGTTTGTGTTCAATGTGAGCAAAAGTATCACTTTGGGTGCGTAAGTTATGAAGGCATTGGATTATGGAAGATGGATAGAAATACTAAAAACAAAAATTGGTTTTGCAGTGTAGTTTGTGGAAACATATTTTTAAACTTAAATAAGTTGCTAGGGAAATCAATTAAGGTTGCAGATAATCTAACTTGGACGTTGGTGAAAAACATAAGTACTGTTGTAGATGATGATGAAGGAGATAATGATGAAGGTTTTACCTCTAATGAGTTTATTCGAAAGGAAAGTAAGTTGAATGCGGCTCTTAGTGTATTGTATGAGAGTTTTGACCCAACTATTGATGCTTCATCAGGAAGAGAGTTAATTAAAGATGTAGTTTTTAGTAGAGGCTCAAAACAAAGGCGCTTAAACTTTCGTGGTTTCTGTAATGTGATTTTAGAGAAAAAAGGCGAGGTGATTTCAGTGGCAACTATAAGGATTTATGGTCAAAAGGTTGCAGAGATTGTCTTCGTGGCAACCAAGAAAAAATATCGAGGGCATGGAATGTGTCGTATGTTGATGAATGAGCTTGAGGAGCAACTGTCTCGCTTAGAAGTTGAGAGCTTGATTTTGCATTCCTCTGAGGAAGCAATAAACACTTGGACAAAATCATTTGGTTTTGTTACGATAACTGGCGAAGATAAGCGTCGATTTATTGATCATACTTTTTTAGAATTTCAGAACACTATCATGTGCCTTAAATATCTCAAATAA 1884 0.3519 MASRSSPPEINIKPEYCQEALIQWYRLAKLGDRKESFRRKDLVLKAKQHLLFLGWKVQYISKKCRWKMCYTSPTNRKHYFNLRRACKNCIKDEGYSVNNLSTTPQASPTNLISSATLPSKKRPRAFEETDELNFNKDYGASISSPVKKPIVTTTSTSEENEKHGCQSEPKFPDLVGNNGRRGKVIKMSVMEKTSEGYGKQGKVLNMSTRKRYTLVSWLINNKVLIPNTKVSCRGRNNIVKRGSLSIDGIVCDCCQITFPITKFEAHASCTRHRPSTSIMLDDGRSLLECQRDALSLRDQKNDHFVFGENVKQENDSVCSICGLGGSIILCDRCPSSFHIYCLNLDRVPDGDWFCPSCCCKICHQPKSKQECNAQNDNNILVCVQCEQKYHFGCVSYEGIGLWKMDRNTKNKNWFCSVVCGNIFLNLNKLLGKSIKVADNLTWTLVKNISTVVDDDEGDNDEGFTSNEFIRKESKLNAALSVLYESFDPTIDASSGRELIKDVVFSRGSKQRRLNFRGFCNVILEKKGEVISVATIRIYGQKVAEIVFVATKKKYRGHGMCRMLMNELEEQLSRLEVESLILHSSEEAINTWTKSFGFVTITGEDKRRFIDHTFLEFQNTIMCLKYLK* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3380 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 358 IPR013083 -
Psa2g3380 627 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 511 610 IPR016181 -
Psa2g3380 627 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 481 619 IPR000182 GO:0016407
Psa2g3380 627 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 627 - -
Psa2g3380 627 CDD NAT_SF 521 582 - -
Psa2g3380 627 Gene3D - 466 624 - -
Psa2g3380 627 SUPERFAMILY FYVE/PHD zinc finger 310 363 IPR011011 -
Psa2g3380 627 Pfam Acetyltransferase (GNAT) family 508 597 IPR000182 GO:0016407
Psa2g3380 627 ProSiteProfiles Zinc finger PHD-type profile. 315 360 IPR019787 -
Psa2g3380 627 SMART PHD_3 317 358 IPR001965 -
Psa2g3380 627 SMART PHD_3 359 419 IPR001965 -
Psa2g3380 627 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 8 627 - -
Psa2g3380 627 Pfam PHD-finger 317 359 IPR019787 -
Psa2g3380 627 Pfam Tify domain binding domain 243 292 IPR032308 -
Psa2g3380 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 359 421 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3380 Psa-Chr2 379104016 379108176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3380 27 574 PHD Transcription Factor Family AT5G58610 33.279 2.82e-90 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa2g3380 Acetyltransf_1 1.7e-10 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3380 - - cam:101509959 776.163