Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3377 ATGGTTAAAGTTTGGCTATTGGCTCTAATGATTCTCTACAATGGCTTCTCTTTAACTGTGTTTGGTATTCATAATTCAACAAGACCTGAATTTGTAAATATTGGAGCTCTCTTCTCTTTCAATACTAGTGTTGGTAAGATTATAAAAATCGCGATAGAAGCTGCTGTTGAAGATGTAAATTCAGATCCAAATATTCTCGGCGAGACCAAGTTGAAGCTCTCTCTTCAAGAAGATTCAAAATATAGAGGCTTTCTTAGCATTGCTGAGGTTTTGCAGGTCATGGCTAGACACAATGTGGCAATAATTGGCCCTCACAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTTCTCTCATTTTCGGCTTTAGACCCTACGCTTTCTTCGCTTCAATTTCCATTCTTTATTAGAACATGTCACAGTGATCTTTTTCAAATGGCGGCCATAGCAGACCTTGTTGATTACTATGGATGGAAAGAAGTCATTGCTGTATATATTGATGATGACAATGGAAGGAACGGAATCGTTGCATTAGGCGATAAGCTTGCTGAGAGACGTTGCAGGATCTCGTATAAAGCACCTGTGAGTCCTGAAGCAACTCCGGAGGAGATTACGAATGTGCTTGTTCAGGTGGCTCTTGCTGAATCAAGAATTATTGTTGTTCATGCTAACACTCTTTGGGGTCCGAAAGTGTTTAGTGTTGCGAGGAATCTTGGAATGATGGGAACTGGTTATGTATGGATAGCCACTGCTTTTCTTTCTGCTATTCTTGATATAAGTGGTCCTCTATCTTCTGATAAAATGGATGAAATTCAAGGAGTGTTGACACCGCGCATGTACACGCCGGATTCGGAGCTTAAAAGAAGGTTTGTTTTGAAGTGGAAAAACTTGACTCGTGGAAATACTGCTGATGGCCCTCTTGGACTTAGTTTTTTGTCTCTCTATGCATATGATACTATTTATGCTCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGAAACAAAATCACCTTTACAAATGATTCAAAACTACTTTCACTACATGGCGACACCTTGAATCTCGAAGCATTGAACGTCTTCAATGAAGGAAACACGTTACGTAAAAACATTTACGGGGTTAACATGACAGGTGTGACAGGCTTGTTCAAATACGCACCTGATGGAAACCTTGTTAATCCTGCATATGAAATCATCAACGTGATTGGAAGCGGGTCACGGAGAATTGGTTATTGGTCTAATCAATCTGGATTATCGGCCGTTCCTCCGGAAACAATTCATTCCAAACCAGGCAATGGTTTCAGGGAAAGCAAAAAGCTACTCCCTGTGATTTGGCCTGGTGACATAGACCAGAAGCCTCGCGGTTGGGTTTTCCCGAACAACGGAAGGCTATTAAGAATTGGAGTACCAATAAGCGTTAGTTACCGCCAATTTGTGTCACAAGTACCAGGCACTGATACATTTCAAGGATTCTGCATTGATGTGTTTCTATCTGCAGTTAACCTTTTGCCTTATGCTGTCCCTTATAAGTTTATTCCATATGGGGATGGTAAGAACAATCCTAGTTGCACCGAGCTTGTCCGTCTAATAACAACCGGTGAATTTGACGGTGCAGTAGGTGACATTGCAATTACAACAGAAAGAACAAAAATGGTGGATTTTACTCAGCCATATGTCGAGTCGGGTTTAGTGGTAGTAGCGCCTGTTAGGGGGTCTGAAACAAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGAATGTGGTTTGTCACAGCTTTGTTTTTCATAATAGTTGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAAAAAACAATTGATTACTATTTTTTGGTTTAGCTTTTCAACAATGTTCTTTTCACATAGGGAAAACACAGTGAGCACACTTGGTCGTTGCGTGCTACTTATATGGTTATTTGTAGTTCTCATAATTACATCAAGTTACACAGCAAGTTTAACATCAATCCTTACTGTACAACAACTTTCTTCACCAATTAAAGGCATTGAAAGTTTAGTAAATAGCAAAGAACCAATTGGTTACAGTCAAGGCTCATTTTCTAAAAATTATTTAATCCAAGAAGTCGGTATTGACGAGTCTAGGCTTGTTCCTTTAATAACACCAGAACAAGTTACTAAATCACTGGAAAAAGGTCCTCGAGATGGTGGTATTGCTGCTTATATCGGCCAACGTGCCTATATCGACATATTCCTTTCAAGCCGGTGTCAGTTTACTGTTGTAGGTCAAGAGTTCACCCGAAACGGTTGGGGATTTGCCTTTCCAAGAGACTCACCACTAGCAGTTGACCTATCAACTGCCATTTTGCAAATGGCAGACAATGGAGACTTGCAAAGAATCCATGACAAGTGGCTTTTGAGTAGAGCTTGTTTAACACAAGGTGCAAAGCTTGAAGTTGAAAGACTCGAACTAAAAAGCTTTTGGGGCCTCTATGTGATATGTGGATCAGCTTGTTTGCTTACTCTACTCATATATTTAATACAGATAATAAGACAGTACAACAAGCACCACTCAGAAGAACTAGATTCTCCCGACCAAAACTCGGGCTCGGGATCAACGCGTTTGAGGAGTTTCCTCACCTTTATAGATGAAAAAGAAGAGACCGTTAAAAACCGTTCGAAGAGAAAGAAAATGGAGAGAATCTCTTATAGAAGTAGTGAGGGAGGATCAATCTCCATCAATTCCAATAAAGATTATGTTGCTCAGTCATCTTCATGCATAGCTGATTCTGTTTCTAATGGTGGAAGTGAACAAGTATTCATCAAAGTAGTGTAA 2856 0.4013 MVKVWLLALMILYNGFSLTVFGIHNSTRPEFVNIGALFSFNTSVGKIIKIAIEAAVEDVNSDPNILGETKLKLSLQEDSKYRGFLSIAEVLQVMARHNVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLFQMAAIADLVDYYGWKEVIAVYIDDDNGRNGIVALGDKLAERRCRISYKAPVSPEATPEEITNVLVQVALAESRIIVVHANTLWGPKVFSVARNLGMMGTGYVWIATAFLSAILDISGPLSSDKMDEIQGVLTPRMYTPDSELKRRFVLKWKNLTRGNTADGPLGLSFLSLYAYDTIYALAHALDAFFKQGNKITFTNDSKLLSLHGDTLNLEALNVFNEGNTLRKNIYGVNMTGVTGLFKYAPDGNLVNPAYEIINVIGSGSRRIGYWSNQSGLSAVPPETIHSKPGNGFRESKKLLPVIWPGDIDQKPRGWVFPNNGRLLRIGVPISVSYRQFVSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSCTELVRLITTGEFDGAVGDIAITTERTKMVDFTQPYVESGLVVVAPVRGSETSALAFLAPFTPRMWFVTALFFIIVGTVVWILEHRVNDEFRGPPKKQLITIFWFSFSTMFFSHRENTVSTLGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVNSKEPIGYSQGSFSKNYLIQEVGIDESRLVPLITPEQVTKSLEKGPRDGGIAAYIGQRAYIDIFLSSRCQFTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMADNGDLQRIHDKWLLSRACLTQGAKLEVERLELKSFWGLYVICGSACLLTLLIYLIQIIRQYNKHHSEELDSPDQNSGSGSTRLRSFLTFIDEKEETVKNRSKRKKMERISYRSSEGGSISINSNKDYVAQSSSCIADSVSNGGSEQVFIKVV* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3377 951 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 928 - -
Psa2g3377 951 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Psa2g3377 951 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Psa2g3377 951 Pfam Bacterial extracellular solute-binding proteins, family 3 482 812 IPR001638 -
Psa2g3377 951 Gene3D - 467 583 - -
Psa2g3377 951 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Psa2g3377 951 PANTHER GLUTAMATE RECEPTOR 3.6 14 928 - -
Psa2g3377 951 CDD GluR_Plant 472 812 - -
Psa2g3377 951 Gene3D - 148 425 - -
Psa2g3377 951 Gene3D - 759 819 - -
Psa2g3377 951 PIRSF IGluLR_plant 1 942 IPR017103 -
Psa2g3377 951 Gene3D - 50 400 - -
Psa2g3377 951 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Psa2g3377 951 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Psa2g3377 951 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Psa2g3377 951 Gene3D - 584 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3377 Psa-Chr2 378848008 378852226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3377 5 913 Ion Channels AT3G51480 57.692 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3377 K05387 - gmx:100785258 1495.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3377 2 378848008 378852226 Psa2g3377 2 378848008 378852226 ECH
Psa4g2444 4 195662193 195666303 Psa2g3377 2 378848008 378852226 ECH
Psa2g3377 2 378848008 378852226 Psa4g2444 4 195662193 195666303 ECH