Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3367 ATGCCTAAGGCTACCTCCAATGCAAAACCTGCTGATAACCTGTTGAAGCGCAAGGGCGCTGGAACTGGAACTAAGCAATCGAAGAAAGCTGCGAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGCTGAGTTCAGAGAGACTTTCAAGAAGGAAAATCCTAACAACAAATCGGTTGCTGTGGTTGGTAAGGCTGGAGGAAAAGAGTGGAAAGCACTGTCTGCTGCTGAAAAGGCTCCTTATGTTGCTACTGCAGAGAAGAAGAAAGTTGAGTATGAGAAGGCTCTCCGTGCCTACAACATTTCATTGACGGAAGGAAAAGCTCCATCTGAGGAAGAGGGATCTGACAAGTCCAAGTCTGAAGTCAATGATGAGGATGATGATGATGATGACGAATCTGACGAGTAA 426 0.4601 MPKATSNAKPADNLLKRKGAGTGTKQSKKAAKDPNKPKRPPSAFFVFMAEFRETFKKENPNNKSVAVVGKAGGKEWKALSAAEKAPYVATAEKKKVEYEKALRAYNISLTEGKAPSEEEGSDKSKSEVNDEDDDDDDESDE* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3367 141 MobiDBLite consensus disorder prediction 107 141 - -
Psa2g3367 141 SUPERFAMILY HMG-box 24 108 IPR036910 -
Psa2g3367 141 MobiDBLite consensus disorder prediction 1 43 - -
Psa2g3367 141 CDD HMGB-UBF_HMG-box 37 103 - -
Psa2g3367 141 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Psa2g3367 141 SMART hmgende2 36 107 IPR009071 -
Psa2g3367 141 Gene3D High mobility group box domain 21 128 IPR036910 -
Psa2g3367 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Psa2g3367 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 3 139 - -
Psa2g3367 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 139 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3367 Psa-Chr2 378581928 378583765 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Psa2g3367 HMG_box 1.6e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3367 K25507 K22507 gmx:100499992 180.259