Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3346 ATGAGTGATACAAAAGAAAGCGAGGAAGTTAGCCATAGTCAGAGCATGCCCACGCCTGTTAATATAGAGGAAGCTGGCCATGTCATTGGTGAAAATGGAAGTCCAAACCAAGCTTCAGCTAGTCCACATTTAAGAGATGACCATCAGATGATTATAGATAATCTTGCTGGCTTGGATTCATATCTTGATCAAGAGATGCATCTTGAAGTTCAACCTGTTACTGCAGAAGAAACTTATGTATCATATGATGATAAATATGAGAGGGAAGAACTACTTTCTGTGGATGAAAATGTGAAACCGAAGGTTGTTTCAGAAGACATTGCACAAGAAAATGTTCAAGATAGTCTTCACTTAGTCCCAGTTGAGGTTGATGATCAGACTCTGAATACAACTGAGTGTGAAGCTGCTTCTGTTGCGAAGGTGGAAGCCAAAAGACTTCCTCAGAGTAATAATGGGGTTGAGAATGATGATACTGCATGTCAAAATAGTGTTAATGATGGCGATGCTGAAACGACAGGGATGGAGGTTGATGTGAAGCCTGAAGTTTGTGAAGCGGCTGATAGTAAAACTTGTGATAATGAACTTATATCGTCAAGTCATAACAATCCGACGCCTTCTGATGCAAATGAACCTATGCCGTCAAGTCATAATGATCCTATTACACCACAACCTGCCCATGCTGAAACAGGGCCAGAAGTCAAGAATGTTTTAGAAGTTGAAAGTAGTAAGGCCGGTGAAGAGCAAGCTGATGAGCATGCAGATAACGGGAACTCAGATTCGCAGCAGAACATGTTTTTCTTGGATGCTGATCATTATTATGATGGTAATGAGTCGGGAACGGAAGAGGACCAAGCAGTTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTTTATGGGGAAGGTCTTAATTGCCTTAAGTTATGGAGAGCTGTAATGAGATTGGGAGGCTATGAGAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCATAACATAAAAGGTGGCGAGCTGAGTGTGCCTATCGCTTCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGCTTTAGCATCAGGTAGAGCCCGGAGATATGCTGCTGAACAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATTCGTTGTCTGTGCAAAAGCGAGAAAAGCAGCTTAAGAATATCAATATACTTAAACGTAAGAAGCCGTCTTATATGGATAATGCTGCAGTCAAAGCAGCACGCAGTAAACCATCTAAACCACAGTTGGAAACAGCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTTTGCGGGAAGAGGTTCGAGTGCAATCAGACCCAGCAGGACGTTTGGTCATAAGTGGTGAGCCAGAGCATCTAAATAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTGAGTTTGCCCTCAAGAATCGATCCTCACCAGACATCAGCCGTGGTAACGTTGCATGGACAGTTGTTTGTTCGTGTCCCATTTGAACAGTCAGAATAG 1731 0.4292 MSDTKESEEVSHSQSMPTPVNIEEAGHVIGENGSPNQASASPHLRDDHQMIIDNLAGLDSYLDQEMHLEVQPVTAEETYVSYDDKYEREELLSVDENVKPKVVSEDIAQENVQDSLHLVPVEVDDQTLNTTECEAASVAKVEAKRLPQSNNGVENDDTACQNSVNDGDAETTGMEVDVKPEVCEAADSKTCDNELISSSHNNPTPSDANEPMPSSHNDPITPQPAHAETGPEVKNVLEVESSKAGEEQADEHADNGNSDSQQNMFFLDADHYYDGNESGTEEDQAVFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVMRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELSVPIASPPEPVNVENQALASGRARRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNSLSVQKREKQLKNINILKRKKPSYMDNAAVKAARSKPSKPQLETAVVDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3346 576 Pfam Hsp20/alpha crystallin family 493 575 IPR002068 -
Psa2g3346 576 Pfam ARID/BRIGHT DNA binding domain 286 368 IPR001606 GO:0003677
Psa2g3346 576 SUPERFAMILY HSP20-like chaperones 485 572 IPR008978 -
Psa2g3346 576 CDD ACD_sHsps_p23-like 495 571 - -
Psa2g3346 576 SMART ARID_2 278 368 - -
Psa2g3346 576 MobiDBLite consensus disorder prediction 240 260 - -
Psa2g3346 576 ProSiteProfiles ARID domain profile. 281 372 IPR001606 GO:0003677
Psa2g3346 576 Gene3D - 476 576 IPR008978 -
Psa2g3346 576 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 476 576 IPR002068 -
Psa2g3346 576 SMART bright_3 282 373 IPR001606 GO:0003677
Psa2g3346 576 MobiDBLite consensus disorder prediction 203 222 - -
Psa2g3346 576 Gene3D - 281 377 IPR036431 GO:0003677
Psa2g3346 576 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 83 575 IPR045147 GO:0006357
Psa2g3346 576 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 83 575 - -
Psa2g3346 576 MobiDBLite consensus disorder prediction 1 46 - -
Psa2g3346 576 SUPERFAMILY ARID-like 274 382 IPR036431 GO:0003677
Psa2g3346 576 MobiDBLite consensus disorder prediction 240 254 - -
Psa2g3346 576 CDD ARID 283 368 - -
Psa2g3346 576 MobiDBLite consensus disorder prediction 203 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3346 Psa-Chr2 376267953 376274551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3346 276 574 ARID Transcription Factor Family AT1G76510 62.171 5.38e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa2g3346 HSP20 3.7e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3346 - - cam:101506818 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3346 2 376267953 376274551 Psa2g3346 2 376267953 376274551 ECH