Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3288 ATGGATTCTTTTTCTCTCTTCTCACCTATATTTTTATACCTTCATCTGTTTTTTCTGTGTCCTCTATATTTAATGTGTTTTGGTCCAAGCAAAATTGTGGCAGTGCAATTAGGAAATCAAACTGATCATTTAGCATTGCTTAAATTCAAAGCATCAATAACCAATGATCCATATAGAACTCTTGAATCTTGGAATTCTTCCATCCACTTCTGCAACTGGTATGGAATCACATGCAGCCTCATGCATCAAAGAGTCATAGAGTTGAACTTAAAAGGATATGAGTTACATGGATCTTTATCTCCTCATGTTGGAAATCTCACTTTTCTGATATCTCTCAACCTTAGCAACAATAGCTTCTTTGGAGAAATTCCACATGAGTTAGGTAAGTTGCTACAATTGCAACAACTTCGCCTCAACAATAACTCATTTGCAGGTGAAATTCCTACAAACTTGACGTATTGCTCCAATCTCACGGACTTATATTTGCATAAGAACAATCTAATTGGCAGAATACCAAATGAAATTGGCTCTTTGAAAAAGCTTCAATCATTTCGTGTCTGGCGAAACAATTTAACTGGAGGAATCTCTTCATTCATAGGGAACCTTTCAAGCTTAGCGCGTTTTTCGTGTGATGACAACAACATACAAGGAGATATTCCACGAGAAATATGTCGCCTCAAAAACTTGTCATTTTTACTTTTGGGATTGAACAAATTTTCTGGTACCGTTCCTTCTTGTCTTTACAACATCTCATCACTTACTGTATTTTCTGTCACAGAGAATAACTTGCATGGCTCTCTTCCACTCAACATGTTCAACACCCTCCCCAATCTCCAAACTTTTTTCATTGGACAAAATCGATTTTCAGGCCAAATCCCTACTTCCATAATAAACGCATCTGCGATTATATGGTTTGATATTGGTACAAATTATTTTGTAGGACAAGCTCCAAGTTTAGGAAGGCTACAACATTTGCATTTTCTAAATTTGGAAGGCAACAATTTAGGTAGCAATTCAGCTAAGGATTTGGAGTTTTTAAAATCGTTGACAAACTGTAGTGTATTGTATGAGTTTTCTATTTGCTGTAATAACTTTGGAGGCATTCTTCCAAGTTCTATAGGCAATTTATCCTCTGAGCTTGCAATACTAGATCTTGCAAATAATAGGATATCAGGAAAAGCTCCTGCTGAATTAGGATCTCTAGTTGGCTTAATTAATTTGAACATGATCTATAACCAATTTGTAGGAAATATTCCAACAACTTTTGGGAAGTTTCGAAAGATGCAAAAGTTAATGTTGAGCGGAAACAAGTTTTCCGGAGATATACCACAACTTATAGGCAATCTTAGTGAATTGTATTATTTAGATTTACATCTTAATATGTTTGAAGGAAATATTCCTCCAAGCATAGAAAACTGTCAAAAGTTACAATATGTAGACATTTCACATAATAAGCTAAGAGGAAGCATCCCTATAGAGGTTTTTAATCTTTTTTCCTTGTCAAACTTACTTGACTTGTCACATAACTCTTTGAGTGGTAGCTTACCAAGAGAAGTGGGTATGCTGAAAAATATTGGTTGGTTTGATGTCTCTGAGAATTGTCTATCCGGTGATATTCCTATAACTATAGGTAAATGCATAAGTTTAGAACAACTTCACTTGCAAGGGAACTCCTTCAACGGAACAATACCGTCTTCTTTGGCTTCTCTCAGAGGTCTTCAATATTTAGACCTTTCAATAAATCAATTGTCTGGATTGATCCCTGATGTTTTACAGAATATTCCTAGTTTAAAACATTTGAATATCTCTTTTAACATGCTGGAAGGTGTGGTACCAACTGACGGTGTCTTTGGAAATGCAACACAAGTAGGATTGGTTGGAAACAAAAAGCTTTGTGGAGGTGTTTCAAAGTTGCATCTACCGCCATGCCCGGTAAAGGATAAGAAACACACAAAACACAATAAGTTCATGTTTGTGGTTGTTGGTGTGACTTCTCTTCTCTTGGTACTATCAATTTTTCTAACTATTTATTGGATGAGGAAAAGAAACCAAAAACAATCTTTTGATTCACCAAGAATTGATCAACTAGATAAGGTTTCATACCGAGACTTACATCAAGGAACGGATGGTTTCTCAGTTACAAACTTGATTGGATCGGGGAGTTTTGGTTCTGTGTACAAAGGAAATCTTGTGTCAGAAGACAATTTTGTTGCCATAAAGGTCTTCAATCTCCAGAAGAAAGGAGCTCATAAGAGTTTTGTTCTTGAATGCAATGCACTCAAAAATATTAGACACAGAAATTTAGTCAAGATTATAACATGTTGTTCAGGTTCAGATTATAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTTCAAATGTAGAGAATCAAACATCATTGAACCTAACTCATAGAGTCAACATCATTACCGATGTTGCTTCTGCACTACATTATCTTCATCAAGAATGTGAGCAATTGGTCCTTCACTGTGATATAAAGCCAAGTAATGTACTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTCGGCATAGCAAGACTTGTATCAGCCATTAACGGTACTTCTCATAAGGATACAAGTACAATTGGAATAAAAGGGACTGTTGGATATGCTCCTCCAGAATATGGAATGGGCGCTAAAGTGTCTACATGTGGAGACATGTATAGTTTTGGAATCCTGATGTTGGAAATGCTTACCGGTAGAAGACCTACCGATGGAGTTTTTGAAAAAGGACAAAATCTGCATAACTTTGTTGCAGATTCATTTCCAGATAATCTTATAAAGGTTTTGGACCCAGGTCTTGTATCAAGAGATACAGAAGTGAAAATACAAGATGAAGTTTGTGAGAATGTTATTTCAACTGTTGATGAGGAGTGCTTGGTTTCACTTTTTAGGATTGGACTTATTTGTTCAATGGAACCACCAAAGGAAAGAATGAATATTGTGGATGTCACTAAAGAGCTTAGCATAATCAGAAAAACTTTCTTTGGTGTTCGTCGTCGAATTAGCAATTGA 3084 0.3583 MDSFSLFSPIFLYLHLFFLCPLYLMCFGPSKIVAVQLGNQTDHLALLKFKASITNDPYRTLESWNSSIHFCNWYGITCSLMHQRVIELNLKGYELHGSLSPHVGNLTFLISLNLSNNSFFGEIPHELGKLLQLQQLRLNNNSFAGEIPTNLTYCSNLTDLYLHKNNLIGRIPNEIGSLKKLQSFRVWRNNLTGGISSFIGNLSSLARFSCDDNNIQGDIPREICRLKNLSFLLLGLNKFSGTVPSCLYNISSLTVFSVTENNLHGSLPLNMFNTLPNLQTFFIGQNRFSGQIPTSIINASAIIWFDIGTNYFVGQAPSLGRLQHLHFLNLEGNNLGSNSAKDLEFLKSLTNCSVLYEFSICCNNFGGILPSSIGNLSSELAILDLANNRISGKAPAELGSLVGLINLNMIYNQFVGNIPTTFGKFRKMQKLMLSGNKFSGDIPQLIGNLSELYYLDLHLNMFEGNIPPSIENCQKLQYVDISHNKLRGSIPIEVFNLFSLSNLLDLSHNSLSGSLPREVGMLKNIGWFDVSENCLSGDIPITIGKCISLEQLHLQGNSFNGTIPSSLASLRGLQYLDLSINQLSGLIPDVLQNIPSLKHLNISFNMLEGVVPTDGVFGNATQVGLVGNKKLCGGVSKLHLPPCPVKDKKHTKHNKFMFVVVGVTSLLLVLSIFLTIYWMRKRNQKQSFDSPRIDQLDKVSYRDLHQGTDGFSVTNLIGSGSFGSVYKGNLVSEDNFVAIKVFNLQKKGAHKSFVLECNALKNIRHRNLVKIITCCSGSDYKGQEFKALVFDYMKNGSLEQWLHPEISNVENQTSLNLTHRVNIITDVASALHYLHQECEQLVLHCDIKPSNVLLDDDMVAHVSDFGIARLVSAINGTSHKDTSTIGIKGTVGYAPPEYGMGAKVSTCGDMYSFGILMLEMLTGRRPTDGVFEKGQNLHNFVADSFPDNLIKVLDPGLVSRDTEVKIQDEVCENVISTVDEECLVSLFRIGLICSMEPPKERMNIVDVTKELSIIRKTFFGVRRRISN* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3288 1027 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Psa2g3288 1027 Gene3D Ribonuclease Inhibitor 155 318 IPR032675 -
Psa2g3288 1027 SUPERFAMILY L domain-like 352 633 - -
Psa2g3288 1027 PANTHER OS04G0122200 PROTEIN 27 1021 - -
Psa2g3288 1027 ProSiteProfiles Protein kinase domain profile. 711 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3288 1027 Pfam Leucine rich repeat 548 607 IPR001611 GO:0005515
Psa2g3288 1027 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515
Psa2g3288 1027 SUPERFAMILY L domain-like 40 335 - -
Psa2g3288 1027 Gene3D Ribonuclease Inhibitor 41 154 IPR032675 -
Psa2g3288 1027 SMART LRR_typ_2 449 473 IPR003591 -
Psa2g3288 1027 SMART LRR_typ_2 106 130 IPR003591 -
Psa2g3288 1027 SMART LRR_typ_2 594 619 IPR003591 -
Psa2g3288 1027 SMART LRR_typ_2 497 522 IPR003591 -
Psa2g3288 1027 SMART LRR_typ_2 570 593 IPR003591 -
Psa2g3288 1027 Gene3D Phosphorylase Kinase; domain 1 692 792 - -
Psa2g3288 1027 Gene3D Ribonuclease Inhibitor 337 652 IPR032675 -
Psa2g3288 1027 ProSitePatterns Protein kinases ATP-binding region signature. 717 740 IPR017441 GO:0005524
Psa2g3288 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Psa2g3288 1027 PANTHER LRR RECEPTOR-LIKE KINASE 27 1021 - -
Psa2g3288 1027 SMART serkin_6 711 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3288 1027 SUPERFAMILY Protein kinase-like (PK-like) 686 1011 IPR011009 -
Psa2g3288 1027 Gene3D Transferase(Phosphotransferase) domain 1 793 1020 - -
Psa2g3288 1027 Pfam Protein kinase domain 712 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3288 Psa-Chr2 372402145 372405427 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3288 39 1023 Receptor kinase-like Gene Family AT3G47570 43.687 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Psa2g3288 Pkinase 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3288 - - mtr:MTR_5g025930 1278.46