Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa2g3273 | ATGGGGTCTAGTAGTAGTAAAGGTGCTTCTTCTTGTAGTTCATCTTCTTCTTCTTCTTGTAGTTTGAGAAAGAATCGATCGAAGAGGCTTAGAGGTTTTCCTTCCTATTGTCTTGGAACAACTTCTGGATCTCGTGACAGTGATAATGATGAACGGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATGTTACATACAGCAGTAGCAATGAAATTGACTCGGATGAAGCGAAATCAGAGTCTTTTAGAAAAGTTAAACCTGATGAAATACCTTGTATGCCTTCTAACATTGATCTTGATGAGTGGAGTCACGCTGAATCCAGAACCGCGAGCATCTCGGCACATGGTTCTTCAACTCAGTCCACAAATTCTACAAGTCGGTTCCTTTCTCGGTTTAGCCTCATTCCGGGTAATATAAGCTTCAGGCTTAGCAGAACCACCAGCTTAGGGTCATCTCGGCCTTGTCCTGATTCTTCTGCAAGTCTTTCTATTTTTAACAATGATGAAGACGAGCTTAGTCTCCATAATAGAAATGAAACTCAACAATATAGTGGTGGCAACTTGCTTAATGGGTCTTTTGTAAGTCCAGTTCCTATACAGTATCACGGAGATGCTTCTAATAGTTTAAGTTCAAATGCCCCAATATTCGGTTTGGGTAGCAATTTGTCGAGCAGTCCTACTCTGTCTCCTCTCGTAGATACTGTTAGAGATGGATACGCCATGCCAGAGATGCCTGGTATGAACATGTTTTCTCCAAGAATTAATACCGAGACAGGAAATGCCATGGATAGACGGAATGGAGCTCGAGAACCTGTTGACCGCAATGTTCGTTTCAGCCGAACTTTAAGCGTTGGAAGGCTTCGCGACAGAGTCCACCGCCGATCAGGATTGGCTGACTTCACCTTTTGCCCTCTGCAACAAGAGAGAGATGCTAGCGAGGATACTCGAAGACAAGTAGAGGAGAGGGGTACAGGAGTGCCACCATCTGATCGAAACGCTTTAAATTCTCGTACTACATCCGGATATCCTCTACCAAACAGGTCTAGCTCTCCATTCAGCACCCAAGACCACGAGGTTGAGGCTTCACGATCAAGAGAAACTAGGTATCAGGATCTACTAGAACATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGCAGCCGGTTTGAAAATCTTTCCGGACATGACAGATCATGTATCTTATCTGGTCAACATAGAAACGGTCGTTGTACATGCAGAATAAGTAGTCGCGAGAACAATTCAAATTCAAACGATGATACAAATGCTAGAGCTAGCATATCAAGAATAGTGATGTTAGCCGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTCTATCTTCCCGCCCTTCTGTATCTTCTATCGGATCTGTTCCCGCGCCTGCCGAAGTTGTCGAATCCTTACCAGTTAAATTATACACGAAGTCACACAAACATCAAGAAGAACCTGTACAATGCTATATATGTCTTGTGGAGTATGAAGATGGAGACAGCATGCGAGTACTTCCTTGCCATCATGAATTTCATACAACATGTATCGACAAATGGCTGAAGGAGATTCACAGGGTATGTCCACTATGTCGAGGAGATATTTGTATATCAGATTCACTCCCAACAGAGAACTAA | 1692 | 0.4326 | MGSSSSKGASSCSSSSSSSCSLRKNRSKRLRGFPSYCLGTTSGSRDSDNDERVCDQNKVNGSDVTYSSSNEIDSDEAKSESFRKVKPDEIPCMPSNIDLDEWSHAESRTASISAHGSSTQSTNSTSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPDSSASLSIFNNDEDELSLHNRNETQQYSGGNLLNGSFVSPVPIQYHGDASNSLSSNAPIFGLGSNLSSSPTLSPLVDTVRDGYAMPEMPGMNMFSPRINTETGNAMDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFTFCPLQQERDASEDTRRQVEERGTGVPPSDRNALNSRTTSGYPLPNRSSSPFSTQDHEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRENNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKSHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPTEN* | 564 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa2g3273 | 563 | MobiDBLite | consensus disorder prediction | 329 | 357 | - | - | |
Psa2g3273 | 563 | ProSiteProfiles | Zinc finger RING-type profile. | 508 | 550 | IPR001841 | - | |
Psa2g3273 | 563 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 471 | 554 | IPR013083 | - | |
Psa2g3273 | 563 | MobiDBLite | consensus disorder prediction | 73 | 87 | - | - | |
Psa2g3273 | 563 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 507 | 550 | - | - | |
Psa2g3273 | 563 | SUPERFAMILY | RING/U-box | 488 | 556 | - | - | |
Psa2g3273 | 563 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 20 | - | - | |
Psa2g3273 | 563 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Psa2g3273 | 563 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 563 | - | - | |
Psa2g3273 | 563 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 563 | - | - | |
Psa2g3273 | 563 | MobiDBLite | consensus disorder prediction | 309 | 324 | - | - | |
Psa2g3273 | 563 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Psa2g3273 | 563 | SMART | ring_2 | 508 | 549 | IPR001841 | - | |
Psa2g3273 | 563 | MobiDBLite | consensus disorder prediction | 41 | 89 | - | - | |
Psa2g3273 | 563 | MobiDBLite | consensus disorder prediction | 308 | 366 | - | - | |
Psa2g3273 | 563 | MobiDBLite | consensus disorder prediction | 58 | 72 | - | - | |
Psa2g3273 | 563 | Pfam | Ring finger domain | 507 | 550 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa2g3273 | Psa-Chr2 | 370833219 | 370837530 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa2g3273 | 225 | 557 | C3H Transcription Factor Family | AT5G45290 | 59.599 | 5.69e-118 | 358 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa2g3273 | - | - | gmx:100786091 | 773.852 |