Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3273 ATGGGGTCTAGTAGTAGTAAAGGTGCTTCTTCTTGTAGTTCATCTTCTTCTTCTTCTTGTAGTTTGAGAAAGAATCGATCGAAGAGGCTTAGAGGTTTTCCTTCCTATTGTCTTGGAACAACTTCTGGATCTCGTGACAGTGATAATGATGAACGGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATGTTACATACAGCAGTAGCAATGAAATTGACTCGGATGAAGCGAAATCAGAGTCTTTTAGAAAAGTTAAACCTGATGAAATACCTTGTATGCCTTCTAACATTGATCTTGATGAGTGGAGTCACGCTGAATCCAGAACCGCGAGCATCTCGGCACATGGTTCTTCAACTCAGTCCACAAATTCTACAAGTCGGTTCCTTTCTCGGTTTAGCCTCATTCCGGGTAATATAAGCTTCAGGCTTAGCAGAACCACCAGCTTAGGGTCATCTCGGCCTTGTCCTGATTCTTCTGCAAGTCTTTCTATTTTTAACAATGATGAAGACGAGCTTAGTCTCCATAATAGAAATGAAACTCAACAATATAGTGGTGGCAACTTGCTTAATGGGTCTTTTGTAAGTCCAGTTCCTATACAGTATCACGGAGATGCTTCTAATAGTTTAAGTTCAAATGCCCCAATATTCGGTTTGGGTAGCAATTTGTCGAGCAGTCCTACTCTGTCTCCTCTCGTAGATACTGTTAGAGATGGATACGCCATGCCAGAGATGCCTGGTATGAACATGTTTTCTCCAAGAATTAATACCGAGACAGGAAATGCCATGGATAGACGGAATGGAGCTCGAGAACCTGTTGACCGCAATGTTCGTTTCAGCCGAACTTTAAGCGTTGGAAGGCTTCGCGACAGAGTCCACCGCCGATCAGGATTGGCTGACTTCACCTTTTGCCCTCTGCAACAAGAGAGAGATGCTAGCGAGGATACTCGAAGACAAGTAGAGGAGAGGGGTACAGGAGTGCCACCATCTGATCGAAACGCTTTAAATTCTCGTACTACATCCGGATATCCTCTACCAAACAGGTCTAGCTCTCCATTCAGCACCCAAGACCACGAGGTTGAGGCTTCACGATCAAGAGAAACTAGGTATCAGGATCTACTAGAACATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGCAGCCGGTTTGAAAATCTTTCCGGACATGACAGATCATGTATCTTATCTGGTCAACATAGAAACGGTCGTTGTACATGCAGAATAAGTAGTCGCGAGAACAATTCAAATTCAAACGATGATACAAATGCTAGAGCTAGCATATCAAGAATAGTGATGTTAGCCGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTCTATCTTCCCGCCCTTCTGTATCTTCTATCGGATCTGTTCCCGCGCCTGCCGAAGTTGTCGAATCCTTACCAGTTAAATTATACACGAAGTCACACAAACATCAAGAAGAACCTGTACAATGCTATATATGTCTTGTGGAGTATGAAGATGGAGACAGCATGCGAGTACTTCCTTGCCATCATGAATTTCATACAACATGTATCGACAAATGGCTGAAGGAGATTCACAGGGTATGTCCACTATGTCGAGGAGATATTTGTATATCAGATTCACTCCCAACAGAGAACTAA 1692 0.4326 MGSSSSKGASSCSSSSSSSCSLRKNRSKRLRGFPSYCLGTTSGSRDSDNDERVCDQNKVNGSDVTYSSSNEIDSDEAKSESFRKVKPDEIPCMPSNIDLDEWSHAESRTASISAHGSSTQSTNSTSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPDSSASLSIFNNDEDELSLHNRNETQQYSGGNLLNGSFVSPVPIQYHGDASNSLSSNAPIFGLGSNLSSSPTLSPLVDTVRDGYAMPEMPGMNMFSPRINTETGNAMDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFTFCPLQQERDASEDTRRQVEERGTGVPPSDRNALNSRTTSGYPLPNRSSSPFSTQDHEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRENNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKSHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPTEN* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3273 563 MobiDBLite consensus disorder prediction 329 357 - -
Psa2g3273 563 ProSiteProfiles Zinc finger RING-type profile. 508 550 IPR001841 -
Psa2g3273 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 554 IPR013083 -
Psa2g3273 563 MobiDBLite consensus disorder prediction 73 87 - -
Psa2g3273 563 CDD mRING-H2-C3H2C2D_ZSWM2 507 550 - -
Psa2g3273 563 SUPERFAMILY RING/U-box 488 556 - -
Psa2g3273 563 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Psa2g3273 563 MobiDBLite consensus disorder prediction 1 23 - -
Psa2g3273 563 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 563 - -
Psa2g3273 563 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 563 - -
Psa2g3273 563 MobiDBLite consensus disorder prediction 309 324 - -
Psa2g3273 563 MobiDBLite consensus disorder prediction 1 26 - -
Psa2g3273 563 SMART ring_2 508 549 IPR001841 -
Psa2g3273 563 MobiDBLite consensus disorder prediction 41 89 - -
Psa2g3273 563 MobiDBLite consensus disorder prediction 308 366 - -
Psa2g3273 563 MobiDBLite consensus disorder prediction 58 72 - -
Psa2g3273 563 Pfam Ring finger domain 507 550 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3273 Psa-Chr2 370833219 370837530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3273 225 557 C3H Transcription Factor Family AT5G45290 59.599 5.69e-118 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3273 - - gmx:100786091 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3273 2 370833219 370837530 Psa2g3273 2 370833219 370837530 ECH