Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3258 ATGGCAGAAGAAGAGCAACACGACGAAATGAAGAAGCTATTTTCCTCCTACATAGGTCTCAGCTTCTCCGTTTTCCTCGCGCTTCTTCCCAACAAACTCCGGGAACATTCTCTCAGAGCCTTTCGCGCCGAGGAAGAGCTAAGCCAGATAAAATCCCGCCGCCAGGAGGATTACAAAGCAAACGCCAGAGTAGCTGAGATCTTCGCCTCACACCGAAACTCCTGGCGCGACGAAGAGAAACGTCTCTTGCGACGAATCGACTCCGCGTCGGAAGAGATCGATAGGCTGAGAGCAATGGTTGAAGATTCCAAGGCGCGTGTGGAGGAGTTGGAGCGTGAGGTTGTTGAGAGGGATGATATGATTGGGTTTATTTCGAGGCGGTTTCAAGAGGAGGGATTAGGTGGTTGCGGGAGCAGGGAACATTACGGTGGGAATAACTATAATAACAGCGGTGGTACTGGTGCCGGTGGTGGTGGTGGTGGTGGGGGTGGGGAGTGGTTTCATAAAGAGGAGGATGAAATGGTGGGGACCACTGCTGATTCTCGTGTGGATGAGGAAGTTGATGTTATCTATCAACAGCATCTTAATAATGGTTTTGATTCTGAGTTTATTGCTTCTTCTGGTTCTAAGTTTTGGGCTGAAAAAGCTTCACTGTGGCAGGATGTGCAGTATGAATCCCTTGAATCGATGTATAATACGAAAGAATTTGTAGCAAGAAGGGAGTCCCCCTGGAAGGTAGACGGTGATTCAGCTGGAGTTTCCTCTAAACTTAAATTACTTGAACAGGAATTATTAAATTTGGAGAAGATTAGTAAGGATGTTCCATCCAAGGTGTCATCCTCGATAAAGAAGCAAGCAAAGAGATTTCAATCGCTTTCAGAAAAAATTGATGATTTATGCAGACGAATAGCTAGTGATCCATGTGAACCCTCCCTCGGTTCAGAATTTCGAACTCAAACTCAAACAGAGTTTTTACTAGAAGCATTCCGTCTTCAACAGGGTGCATCTGAAACTGGACAGAAACTAATGGCATTGCATACCGAAGTCGGGAAGACCCATTACAGGGACGAGTTAAGAGGCGAGACCACACTAACCACAAGACGATCGTTAGACTCAATCCGGAACAACTTCAGAGAACTCCAGCGAAATCTAGAGATATGGTTGGCCAGAATCATCGGTGATCTCGAAGGGATTCTTGCAAGGGACGATAATGAGAGCGATCCTACTTCCAATCACAAGGTTATTTTCCAAATTATTATCGCAGTTTCAGCTGCATTTGTTGTTTCTTCACTCTACCGTCTCATAGCCATTTGTTTGTGTCACCGAGGAAGTACAACAACAGATCAAAACCGACTACAACCACCAAATCACGCTGCGCTACCTAGCCTTGTCGAAAGGACAACCTCATCAGTAGGTCTAGCACACCGAATTCCGACACACAAGTACCACAAGAGAAATAAAGGTGACGTTGTATCGGATGATGAAGGCGGTACCTGCGCAGTATGTTTGGGAGATTTTGAGGAGGGTGAGGAGTTGAAGACTATGCCAGAGTGCTTGCACTCTTTTCATGTACATTGTATTGACATGTGGCTCCGTTCACATATGAGTTGCCCTATTTGTCGCGCCGGTGCCGGTGCCGGTGCTGCCCCTTTGCCGACAGCGAGTGCAAATCATCACAGCATAGATATGAATATGGTTCCACTTGGTCCTGTCATGCAAAGTGGATTGTTGCGATGGCTTAGGCGTGTGTCCCAAACCGCGTCGGTACGACGTGAGAGGGCTGCAACGAGGACCACCAGGCCACAAGTTGTCGATAACTCGTTTGACGATGCATCTAATTTGCATCCCCGAGGTTCCCATCCGTATGTTTCTCATATCCGACTCTCCCAGGCATATGATGCAACATATTTTGAAATTCCTGAAGCCCCTGAAGCGCAGAAGGAAGCCGCTGTTGATGCTCATTTAGAGAGTTACCCATGA 1980 0.4707 MAEEEQHDEMKKLFSSYIGLSFSVFLALLPNKLREHSLRAFRAEEELSQIKSRRQEDYKANARVAEIFASHRNSWRDEEKRLLRRIDSASEEIDRLRAMVEDSKARVEELEREVVERDDMIGFISRRFQEEGLGGCGSREHYGGNNYNNSGGTGAGGGGGGGGGEWFHKEEDEMVGTTADSRVDEEVDVIYQQHLNNGFDSEFIASSGSKFWAEKASLWQDVQYESLESMYNTKEFVARRESPWKVDGDSAGVSSKLKLLEQELLNLEKISKDVPSKVSSSIKKQAKRFQSLSEKIDDLCRRIASDPCEPSLGSEFRTQTQTEFLLEAFRLQQGASETGQKLMALHTEVGKTHYRDELRGETTLTTRRSLDSIRNNFRELQRNLEIWLARIIGDLEGILARDDNESDPTSNHKVIFQIIIAVSAAFVVSSLYRLIAICLCHRGSTTTDQNRLQPPNHAALPSLVERTTSSVGLAHRIPTHKYHKRNKGDVVSDDEGGTCAVCLGDFEEGEELKTMPECLHSFHVHCIDMWLRSHMSCPICRAGAGAGAAPLPTASANHHSIDMNMVPLGPVMQSGLLRWLRRVSQTASVRRERAATRTTRPQVVDNSFDDASNLHPRGSHPYVSHIRLSQAYDATYFEIPEAPEAQKEAAVDAHLESYP* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3258 659 Pfam Ring finger domain 498 541 IPR001841 -
Psa2g3258 659 PANTHER EXPRESSED PROTEIN 3 402 - -
Psa2g3258 659 SUPERFAMILY RING/U-box 489 544 - -
Psa2g3258 659 Coils Coil 72 120 - -
Psa2g3258 659 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 3 402 - -
Psa2g3258 659 CDD RING-H2_PA-TM-RING 498 541 - -
Psa2g3258 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 545 IPR013083 -
Psa2g3258 659 SMART ring_2 499 540 IPR001841 -
Psa2g3258 659 Coils Coil 370 390 - -
Psa2g3258 659 Coils Coil 282 302 - -
Psa2g3258 659 ProSiteProfiles Zinc finger RING-type profile. 499 541 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3258 Psa-Chr2 369768115 369774285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3258 413 563 C3H Transcription Factor Family AT4G10150 31.613 1.55e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3258 - - mtr:MTR_5g026680 588.571