Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3257 ATGGCAGATGATAATGGTGATAACCCTCTATCTGACAAAGTTGTTATCCTCCTTATCGCCATGGGTTCAGCATTATTTGTTGTCTCATTGTACCATGTCATATCCATTTGTTTTTGCCGCCAACAACGGGCCACCACAAACCAAAACTCACCACGGCTCGCCGCGGCAGACGAAAGCGCATCGACGTCAGTGGCAAACATTATCCCAACACACAAGTACCTCAAGAGAAGTAAAGCTGATGTTTCGGATGAAGAAAGAGACACATGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAAGAGTTGAGGACTATGCCTGAGTGCTTGCACTCCTTTCATGTACAATGTATTGACATGTGGCTCCATTCGCATTCGAGTTGCCCCATTTGCCGCGCCAGTGCCGCCCCTTCGCCGGCCGTGAATGAACAACATCGCAGCATAGATATTAGTCATACGGAGGCTCCACTTGCTATCATGCAACGTGGGTTGGTGCGATGGTGA 501 0.489 MADDNGDNPLSDKVVILLIAMGSALFVVSLYHVISICFCRQQRATTNQNSPRLAAADESASTSVANIIPTHKYLKRSKADVSDEERDTCAVCLGDFEEGEELRTMPECLHSFHVQCIDMWLHSHSSCPICRASAAPSPAVNEQHRSIDISHTEAPLAIMQRGLVRW* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3257 166 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 166 - -
Psa2g3257 166 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Psa2g3257 166 Pfam Ring finger domain 87 131 IPR001841 -
Psa2g3257 166 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 166 IPR044675 -
Psa2g3257 166 CDD RING-H2_PA-TM-RING 88 131 - -
Psa2g3257 166 SUPERFAMILY RING/U-box 73 137 - -
Psa2g3257 166 SMART ring_2 89 130 IPR001841 -
Psa2g3257 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 138 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3257 Psa-Chr2 369677553 369678053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3257 46 149 C3H Transcription Factor Family AT4G10160 41.346 1.93e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3257 - - aip:107639941 178.333